View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15885_high_19 (Length: 304)
Name: NF15885_high_19
Description: NF15885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15885_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 30419915 - 30420204
Alignment:
| Q |
1 |
agcccaacatagaaaaacatgtatcaagctagtgactccattagcaagcaccattggaaaaattatattttgtgtttgtaggaatttaacaaggcaccta |
100 |
Q |
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| T |
30419915 |
agcccaacatagaaaaacatgtatcaagctagtgactccattagcaagcaccattggaaaaattatattttgtgtttgtaggaatttaacaaggcaccta |
30420014 |
T |
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| Q |
101 |
agaagggcattggctgaaaggcttggaattgagtaacgagcaaatagttgagcttgtgctgcaatagttttatcttgacgtaaaattatcaaaatcggtt |
200 |
Q |
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| T |
30420015 |
agaagggcattggctgaaaggcttggaattgagtaacgagcaaatagttgagcttgtgctgcaatagttttgtcttgacgtaaaattatcaaaatcggtt |
30420114 |
T |
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| Q |
201 |
ttaagtatgccaaaataaatgataaaggtatactaacaagggtggttgccaacattgctctttgtgtatatattccaaccatatgatatt |
290 |
Q |
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| T |
30420115 |
ttaagtatgccaaaataaatgataaaggtatactaacaagggtggttgccaacattgctctttgtgtatatattccaaccatatgatatt |
30420204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 30437423 - 30437708
Alignment:
| Q |
3 |
cccaacatagaaaaacatgtatcaagctagtgactccattagcaagcaccattggaaaaattatattttgtgtttgtaggaatttaacaaggcacctaag |
102 |
Q |
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| T |
30437423 |
cccagcataaaataacatgtattaagctaatgaatccattagcaagcaccataggaaaaacaatgttttgtgtctgtaggaatttaataatgcatcgaag |
30437522 |
T |
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| Q |
103 |
aagggcattggctgaaaggcttggaattgagtaacgagcaaatagttgagcttgtgctgcaatagttttatcttgacgtaaaattatcaaaatcggtttt |
202 |
Q |
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| T |
30437523 |
aagaccattggcagaaagacttggaattgaataacgagcaaatagttgagcttgtgttgcaatagttttgtcttgatgtaaaattatcaaaatgggtttt |
30437622 |
T |
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| Q |
203 |
aagtatgccaaaataaatgataaaggtatactaacaagggtggttgccaacattgctctttgtgtatatattccaaccatatgata |
288 |
Q |
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| T |
30437623 |
aagtatgcccaaataaatgataagggtatactaacaatggtggtagccaacattgccctttgtgtatatattccaaccatatgata |
30437708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 4 - 290
Target Start/End: Original strand, 30381124 - 30381410
Alignment:
| Q |
4 |
ccaacatagaaaaacatgtatcaagctagtgactccattagcaagcaccattggaaaaattatattttgtgtttgtaggaatttaacaaggcacctaaga |
103 |
Q |
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||||||||||| ||||||| ||| |||||| ||||||||| | |||||| ||||||| ||| ||||| ||||| | ||||||||||| |||||||||| |
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| T |
30381124 |
ccaacatagaaggacatgtactaaggtagtgattccattagccaacaccatgggaaaaactatgttttgagtttgcaagaatttaacaatgcacctaaga |
30381223 |
T |
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| Q |
104 |
agggcattggctgaaaggcttggaattgagtaacgagcaaatagttgagcttgtgctgcaatagttttatcttgacgtaaaattatcaaaatcggtttta |
203 |
Q |
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||| ||||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| | |||||| |||| || |
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| T |
30381224 |
aggccattggcagcaaggctaggaattgagtaacgagcaaataattgagcttgtgctgcaatagtttggtcttgatgtaaaatcaccaaaataggttcta |
30381323 |
T |
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| Q |
204 |
agtatgccaaaataaatgataaaggtatactaacaagggtggttgccaacattgctctttgtgtatatattccaaccatatgatatt |
290 |
Q |
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| T |
30381324 |
agtatgcccatataattgacaagggtatactaacaagggtggtaaccaacatggctctttgtgtgtatatgccaaccatatgatatt |
30381410 |
T |
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