View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15885_high_20 (Length: 304)
Name: NF15885_high_20
Description: NF15885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15885_high_20 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 43065732 - 43065438
Alignment:
| Q |
8 |
tatacagaatccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactnnnnnnnnnncattacgataatataataatggcatggta |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43065732 |
tatacagaatccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactaaaaaaaa--cattacgataatataataatggcatggta |
43065635 |
T |
|
| Q |
108 |
atgttaaaatgcaagaatgaagtatatatgagaacacagaaccatcgactattttaaaactagcgattcataaatnnnnnnncgataggattcagaattg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43065634 |
atgttaaaatgcaagaatgaagtatatatgagaacacagaaccatcaactattttaaaactagcgattcataaataaaaaaacgataggattcagaattg |
43065535 |
T |
|
| Q |
208 |
cgattaaacacgtgcatgaatagaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcga |
304 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43065534 |
cgattaaacatgtgcatgaatcgaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcga |
43065438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 43047402 - 43047473
Alignment:
| Q |
230 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43047402 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaat |
43047473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 43047239 - 43047289
Alignment:
| Q |
89 |
atataataatggcatggtaatgttaaaatgcaagaatgaagtatatatgag |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
43047239 |
atataataatggcatggtaatgttaaaatgcatgaatgaagaatgtatgag |
43047289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 42159055 - 42159107
Alignment:
| Q |
235 |
acaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaata |
287 |
Q |
| |
|
||||||||||||| |||||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
42159055 |
acaaaagcattattatgtaatcgatcaaagatgtaaagtaaagtacacgaata |
42159107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University