View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15885_low_1 (Length: 432)
Name: NF15885_low_1
Description: NF15885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15885_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 6 - 416
Target Start/End: Original strand, 4483491 - 4483901
Alignment:
| Q |
6 |
agattattctgcatgacttgtctagcttcaagttgaatatggtcactttaaccaatgaaattgctagactgtatttcgcttagtaaaatttttgggctgc |
105 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4483491 |
agattcttctgcatgacttgtccagcttcaagttgaatatggccacttaaaccaatgaaattgctagactgtatttcgcttagtaaaaattttgggctgc |
4483590 |
T |
|
| Q |
106 |
tattgttcctactggtcattctgttgaaagcttgagttacaatgttaatgctatcgtatgcttgtagagcataaaatcctgggtatcggttatcttcctc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4483591 |
tattgttcctactggtcattctgttgaaagcttgagttacaatgttaatgctatcatatgcttgtagagcataaaatcctgggtatcggttatcttcctc |
4483690 |
T |
|
| Q |
206 |
tggattctttgaccaaaacgttctccggaattgagccttaaattctttatactccctgcttctttccgagtagtaggtcttaattcctaaagcaccttcc |
305 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4483691 |
tggattctttgaccaaaacgttctctggaattgagccttaaattctttatactccctgcttctttccgagtagtaggtcttaattcctaaagcaccttcc |
4483790 |
T |
|
| Q |
306 |
atataagatatagcagacttattgacagagtccagcaaattagctatgctctccgggatcatccaaaccgattctttatccactagtccaacttttgaag |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4483791 |
atataagatatagcagacttattgacagagtccagcaaattagctatgctctccgggatcatccaaaccgattctttatccactagtccaacttttgaag |
4483890 |
T |
|
| Q |
406 |
cttctttgaac |
416 |
Q |
| |
|
||||||||||| |
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|
| T |
4483891 |
cttctttgaac |
4483901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 6 - 416
Target Start/End: Original strand, 4488459 - 4488869
Alignment:
| Q |
6 |
agattattctgcatgacttgtctagcttcaagttgaatatggtcactttaaccaatgaaattgctagactgtatttcgcttagtaaaatttttgggctgc |
105 |
Q |
| |
|
||||| |||||||||| ||| | || |||||||||||||||| ||||| |||||| |||||||| ||| ||||||| ||||||||| | |||||||||| |
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|
| T |
4488459 |
agattcttctgcatgagttggccagattcaagttgaatatggccacttaaaccaaggaaattgcaagaaagtatttctcttagtaaagtctttgggctgc |
4488558 |
T |
|
| Q |
106 |
tattgttcctactggtcattctgttgaaagcttgagttacaatgttaatgctatcgtatgcttgtagagcataaaatcctgggtatcggttatcttcctc |
205 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4488559 |
tattcttcctactggtcattctgttcaaagcttgagttacaatgttaatgctatcatatgcttgtagagcataaaatcctgggtatcggttatcttcctc |
4488658 |
T |
|
| Q |
206 |
tggattctttgaccaaaacgttctccggaattgagccttaaattctttatactccctgcttctttccgagtagtaggtcttaattcctaaagcaccttcc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4488659 |
tggattctttgaccaaaacgttctccggaattgagcctcaaattctttatactccctgcttctttccgagtagtaggtcttaattcctaaagcaccttcc |
4488758 |
T |
|
| Q |
306 |
atataagatatagcagacttattgacagagtccagcaaattagctatgctctccgggatcatccaaaccgattctttatccactagtccaacttttgaag |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4488759 |
atataagatatagcagacttattgacagagtccagcaaattagctatgctctccgggatcatccaagccgattctttatccactagtccaacttttgaag |
4488858 |
T |
|
| Q |
406 |
cttctttgaac |
416 |
Q |
| |
|
||||||||||| |
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|
| T |
4488859 |
cttctttgaac |
4488869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 409
Target Start/End: Complemental strand, 34605412 - 34605271
Alignment:
| Q |
268 |
tttccgagtagtaggtcttaattcctaaagcaccttccatataagatatagcagacttattgacagagtccagcaaattagctatgctctccgggatcat |
367 |
Q |
| |
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|||| |||||||| || || ||||||||||| |||||||||||||| ||| |||||||||||||| |||| |||||||| ||||||||| | || || |
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| T |
34605412 |
tttctgagtagtatgttttgattcctaaagctccttccatataagaaatactcgacttattgacagaatccaacaaattagttatgctctctgagactat |
34605313 |
T |
|
| Q |
368 |
ccaaaccgattctttatccactagtccaacttttgaagcttc |
409 |
Q |
| |
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|||| | || | | ||||||||||||| | || ||||||||| |
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|
| T |
34605312 |
ccaagctgaatttctatccactagtcccatttgtgaagcttc |
34605271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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