View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15886_high_1 (Length: 426)
Name: NF15886_high_1
Description: NF15886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15886_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 11 - 410
Target Start/End: Original strand, 24246873 - 24247272
Alignment:
| Q |
11 |
cataggaaggaagacaacttgatgatgatcaagtgagttttctagtactagatttcagtttaatgactaattaatgtcttgagtacttttaaacacttcg |
110 |
Q |
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| T |
24246873 |
cataggaaggaagacaacttgatgatgatcaagtgagttttctagtactagatttcagtttaatgactaattaatgtcttgagtacttttaaacacttcg |
24246972 |
T |
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| Q |
111 |
gagtggattctgtctctctgaaactgagaacttctgtaatctaatgaatctgtttttaaatgataacataaatttctccttttattattctgcacaagtt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24246973 |
gagtggattctgtctctctgaaactgagaacttctgtaatctaatgaatctgtttttaaatgataacataaatttctccttttattattatgcacaagtt |
24247072 |
T |
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| Q |
211 |
tgtacagaattgttagtttgcctatttagaaaaatgttaattatctttggttatcatagttaaggcttttagagtgaaattattattaacaatactatgc |
310 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24247073 |
tgtccagaattgttagtttgcctatttagaaaaatgttaattatctttggttatcatagttaaggcttttagagtgaaattattattaacaatactatgc |
24247172 |
T |
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| Q |
311 |
gatttgtgtttccttgtgaatttaaaggatgcatatggatctcgtgtttggtttcttcaagaatgcatgtcacatgcttagggccaacggtgagattcat |
410 |
Q |
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| T |
24247173 |
gatttgtgtttccttgtgaatttaaaggatgcatatggatctcgtgtttggtttcttcaagaatgcatgtcacatgcttagggccaacggtgagattcat |
24247272 |
T |
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