View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15886_low_1 (Length: 587)
Name: NF15886_low_1
Description: NF15886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15886_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Complemental strand, 39534114 - 39533546
Alignment:
| Q |
1 |
agaaggaagacccttaagttgatccaaagcctcaatagttttccttatctccaatttctgaactctatctctaaaaccaccatagtttgaaggcatatcc |
100 |
Q |
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| T |
39534114 |
agaaggaagacccttaagttgatccaaagcctcaatagttttccttatctccaatttctgaactctatctctaaaaccaccatagtttgaaggcatatcc |
39534015 |
T |
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| Q |
101 |
tccaaaccaaaaggcaaatcctccacatgatacaaagtacttccccaaaaatacttcacctccacattctcctccttcattttcccctcaatcttctcct |
200 |
Q |
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| T |
39534014 |
tccaaaccaaaaggcaaatcctccacatgatacaaagtacttccccaaaaatacttcacctccacattctcctccttcattttcccctcaatcttctcct |
39533915 |
T |
|
| Q |
201 |
ccatcttgacctcatcatgagaaacctctctatgacaatacaccgcatccgccccaatttccttcgccaattcaaccaaaaccgtctctggcttcccaac |
300 |
Q |
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| T |
39533914 |
ccatcttgacctcatcatgagaaacctctctatgacaatacaccgcatccgccccaatttccttcgccaattcaaccaaaactgtctccggcttcccaac |
39533815 |
T |
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| Q |
301 |
tctcaccacaagatccgaccctcttgccttaagattcttcctaagatccgaaaccgattcaatcaaaaaactagcacgataaggacctgttttatcaaac |
400 |
Q |
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| T |
39533814 |
tctcaccacaagatccgaccctcttgccttaagattcttcctaagatccgaaaccgattcaatcaaaaaactagcacgataaggacctgttttatcaaac |
39533715 |
T |
|
| Q |
401 |
ccagatgaagattttccataatcagcaggatcaaaacaataaacaggtaaaacagaaattgactcattattcgcagtgttcaaagcttcattatcatgaa |
500 |
Q |
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| T |
39533714 |
ccagatgaagattttccataatcagcaggatcaaaacaataaacaggtaaaacagaaattgactcattattcgcagtgttcaaagcttcattatcatgaa |
39533615 |
T |
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| Q |
501 |
cacgaagatcattacggaaccaaacaatggcggttctccggagagcagcagcggaagaaggatcattag |
569 |
Q |
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| T |
39533614 |
cacgaagatcattacggaaccaaacaatggcggttctccggagagcagcagcggaagaaggatcattag |
39533546 |
T |
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