View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15886_low_4 (Length: 332)
Name: NF15886_low_4
Description: NF15886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15886_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 37335395 - 37335557
Alignment:
| Q |
18 |
catgcgactgaatcatatatgatgcaactatatacaaaacgacatcaaattattgcaatcatgtcatattttaac--tatatatttgaggaaaaaattga |
115 |
Q |
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| T |
37335395 |
catgcgactgaatcatatatgatgcaactatatacaaaacgacatcaaattattgcaatcatgtcatattttaactatatatatttgaggaaaaaattga |
37335494 |
T |
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| Q |
116 |
tcttgaattcaatggttcttatctaagttgggaggaatacaataaaatatttatcaaacaacaa |
179 |
Q |
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| T |
37335495 |
tcttgaattcaacggttcttatctaagtt-ggaggaatacaataaaatatttatcaaacaacaa |
37335557 |
T |
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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 181 - 317
Target Start/End: Original strand, 37335608 - 37335743
Alignment:
| Q |
181 |
aggactgaggtcactccaaagactttctttgtttaaaaatatcaaatcctttgattattatttttccacataaatgagctgatgcaagtattattatatt |
280 |
Q |
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| T |
37335608 |
aggactgaggtcaccccaaagactttctttgtttaaaaa-atcaaatcctttgattattatttttccacataaataagcaagtgtaagtgttattatatt |
37335706 |
T |
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| Q |
281 |
aattttctactaaggaatttatttttctaaccatgat |
317 |
Q |
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| T |
37335707 |
aattttcttctgatgaaattatttttctaaccatgat |
37335743 |
T |
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