View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15886_low_6 (Length: 296)
Name: NF15886_low_6
Description: NF15886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15886_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 33829121 - 33828865
Alignment:
| Q |
22 |
tgatgagtggaaatgttgaataaagaaagcaagcagtaaggaagaagaatatgaggcatgtttgtgctgcactgcttaatcgtgggagacatccgagtac |
121 |
Q |
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| T |
33829121 |
tgatgagtggaaatgttgaataaagaaagcaagcagtacggaagaagaatatgaggcatgtttgtgctgcactgcttaatcgtgggagacatccgagtac |
33829022 |
T |
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| Q |
122 |
catgtttttgttatactagagtagagcaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacgccattagcattataact |
221 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
33829021 |
catgtttttgttatactagagtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgatgccattagcgttataact |
33828922 |
T |
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| Q |
222 |
tgcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagccccttt |
278 |
Q |
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| T |
33828921 |
tgcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagctccttt |
33828865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 123 - 278
Target Start/End: Complemental strand, 33821792 - 33821637
Alignment:
| Q |
123 |
atgtttttgttatactagagtagagcaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacgccattagcattataactt |
222 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
33821792 |
atgtttttgttatactagagtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacaccattagcgttataactc |
33821693 |
T |
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| Q |
223 |
gcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagccccttt |
278 |
Q |
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| T |
33821692 |
gcaccacttgttggatccaccaagaggttcccagcgtagccagggtaagccccttt |
33821637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 33821878 - 33821837
Alignment:
| Q |
29 |
tggaaatgttgaataaagaaagcaagcagtaaggaagaagaa |
70 |
Q |
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| T |
33821878 |
tggaaatgttgaataaagcaagcaagcagtgaggaagaggaa |
33821837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 278
Target Start/End: Complemental strand, 27003025 - 27002889
Alignment:
| Q |
142 |
gtagagcaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacgccattagcattataacttgcaccacttgttggatcca |
241 |
Q |
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||||| |||||||||||| | ||||||| | || ||||||||||| ||||||||||| | ||||||||||| || || |||||||||||| ||||| |
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| T |
27003025 |
gtagaacaaaccgaggttttagggtcaacaatagcaggcaacaaatacttccttccattatcaccattagcattgtagctagcaccacttgttttatcca |
27002926 |
T |
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| Q |
242 |
ccaaaaggttcccagcgtagccagggtaagccccttt |
278 |
Q |
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| T |
27002925 |
ccaaaaggtccccagcataaccaggataagctccttt |
27002889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 26722270 - 26722170
Alignment:
| Q |
178 |
ggcaacaaatatttccttccattgacgccattagcattataacttgcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagcccctt |
277 |
Q |
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||||||||||| ||||||||||| | ||||| |||||||| || |||||||||||| |||| |||||||| |||||| || ||||| ||||| |||| |
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| T |
26722270 |
ggcaacaaatacttccttccattatcaccatttgcattatagctagcaccacttgttttgtccagcaaaaggtccccagcataaccaggataagctcctt |
26722171 |
T |
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| Q |
278 |
t |
278 |
Q |
| |
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| |
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|
| T |
26722170 |
t |
26722170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 26992019 - 26991919
Alignment:
| Q |
178 |
ggcaacaaatatttccttccattgacgccattagcattataacttgcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagcccctt |
277 |
Q |
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||||||||||| ||||||||||| | ||||| |||||||| || |||||||||||| |||| |||||||| |||||| || ||||| ||||| |||| |
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| T |
26992019 |
ggcaacaaatacttccttccattatcaccatttgcattatagctagcaccacttgttttgtccagcaaaaggtccccagcataaccaggataagctcctt |
26991920 |
T |
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| Q |
278 |
t |
278 |
Q |
| |
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| |
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| T |
26991919 |
t |
26991919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 26996714 - 26996614
Alignment:
| Q |
178 |
ggcaacaaatatttccttccattgacgccattagcattataacttgcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagcccctt |
277 |
Q |
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||||||||||| ||||||||||| | |||||||| || || || |||||||||||| ||||||||||||| |||||| || ||||| ||||| |||| |
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| T |
26996714 |
ggcaacaaatacttccttccattatcaccattagcgttgtagctagcaccacttgttttgtccaccaaaaggtccccagcataaccaggataagctcctt |
26996615 |
T |
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| Q |
278 |
t |
278 |
Q |
| |
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| |
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| T |
26996614 |
t |
26996614 |
T |
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