View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15888_high_1 (Length: 678)

Name: NF15888_high_1
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15888_high_1
NF15888_high_1
[»] chr5 (1 HSPs)
chr5 (13-663)||(26422043-26422690)


Alignment Details
Target: chr5 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 13 - 663
Target Start/End: Original strand, 26422043 - 26422690
Alignment:
Q  13 agcataggtgtggaatgacattaaaagaattgattactggaaatatcgtggaacagggggagaaaacacctaagttagttattcattaagaaagacaatt 112  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||| ||||||||||||    
T  26422043 agcacaggtgtggaataacattaaaagaattgattactggaaatattgtggaacagggggagaaaac---taagttagttattcattgagaaagacaatt 26422139  T
Q  113 catagaagagactatatgagaagatgcttccaaactttaagactccagccggagaaaatagctgaagttcaggcatgtggtgatgcacattcagggaaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26422140 catagaagagactatatgagaagatgcttccaaactttaagactccagccggagaaaatagctgaagttcaggcatgtggtgatgcacattcagggacag 26422239  T
Q  213 attaatattttagggataaaaaagaactcaaaggaaactgcaagtggaactaaaatctggagtacaaaagtgaatattggggaggaataaaattgaaaag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26422240 attaatattttagggataaaaaagaactcaaaggaaactgcaagtggaactaaaatctggagtacaaaagtgaatattggggaggaataaaattgaaaag 26422339  T
Q  313 ggcgatatgagaatagtggtgtcaagtgggaggagtcagttgctggaattttgatgatgggcacaaattttttctgagtgaggagctttacttcaggttt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26422340 ggcgatatgagaatagtggtgtcaagtgggaggagtcagttgcgggaattttgatgatgggcacaaatttcttctgagtgaggagctttacttcaggttt 26422439  T
Q  413 tgcgggaattttgatgatggccatcaattagttatacactttttatctttttcgtgcatggggttcctatcataatataactttaacagacaaaagatgc 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26422440 tgcgggaattttgatgatggccatcaattagttatacactttttatctttttcgtgcatggggttcctatcataatataactttaacagacaaaagatgc 26422539  T
Q  513 tagaaattcaggttttcaaaatattttctcatctctcatatggctgttcaaggatatatagccataaagaatataaaattcagaagataagccgtaaata 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26422540 tagaaattcaggttttcaaaatattttctcatctctcatatggctgttcaaggatatatagccataaagaatataaaattcagaagataagccgtaaata 26422639  T
Q  613 tccaaaggtttagatttaaaccactcaactacaaccttcaaggtatttatt 663  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26422640 tccaaaggtttagatttaaaccactcaactacaaccttcaaggtatttatt 26422690  T

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