View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15888_high_18 (Length: 242)

Name: NF15888_high_18
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15888_high_18
NF15888_high_18
[»] chr2 (8 HSPs)
chr2 (39-124)||(20606885-20606970)
chr2 (39-124)||(40584333-40584418)
chr2 (64-123)||(4879056-4879115)
chr2 (84-122)||(44297423-44297461)
chr2 (79-124)||(127739-127784)
chr2 (63-124)||(9157014-9157075)
chr2 (63-124)||(10173935-10173996)
chr2 (79-123)||(44986812-44986856)
[»] chr7 (10 HSPs)
chr7 (39-123)||(30581230-30581314)
chr7 (76-119)||(36611555-36611598)
chr7 (33-119)||(36611696-36611782)
chr7 (81-123)||(42818559-42818601)
chr7 (79-124)||(2403445-2403490)
chr7 (81-124)||(46491694-46491737)
chr7 (35-121)||(37783441-37783527)
chr7 (71-123)||(3314955-3315007)
chr7 (81-125)||(7329074-7329118)
chr7 (79-123)||(17114145-17114189)
[»] chr4 (12 HSPs)
chr4 (39-123)||(45393981-45394065)
chr4 (2-126)||(44841921-44842045)
chr4 (61-124)||(26764283-26764346)
chr4 (124-159)||(53601539-53601574)
chr4 (3-125)||(32138766-32138887)
chr4 (76-125)||(14527577-14527626)
chr4 (75-123)||(24666129-24666177)
chr4 (24-123)||(6056948-6057047)
chr4 (81-124)||(34450814-34450857)
chr4 (61-123)||(5228537-5228599)
chr4 (81-123)||(47157385-47157427)
chr4 (81-122)||(47156634-47156675)
[»] chr3 (18 HSPs)
chr3 (76-128)||(18745371-18745423)
chr3 (75-123)||(53343856-53343904)
chr3 (76-118)||(54308458-54308500)
chr3 (74-123)||(20807937-20807986)
chr3 (74-123)||(20808606-20808655)
chr3 (79-132)||(47571943-47571996)
chr3 (79-124)||(53344745-53344790)
chr3 (75-123)||(49350270-49350318)
chr3 (73-123)||(4706954-4707004)
chr3 (70-123)||(15288282-15288335)
chr3 (76-121)||(18744622-18744667)
chr3 (79-124)||(47808361-47808406)
chr3 (70-118)||(9830577-9830625)
chr3 (81-121)||(29516555-29516595)
chr3 (79-123)||(47571196-47571240)
chr3 (74-118)||(47677526-47677570)
chr3 (79-123)||(49349676-49349720)
chr3 (81-125)||(53346502-53346546)
[»] chr5 (7 HSPs)
chr5 (24-118)||(15561415-15561509)
chr5 (79-123)||(33087470-33087514)
chr5 (76-124)||(39466884-39466932)
chr5 (79-126)||(2029051-2029098)
chr5 (76-123)||(23253487-23253534)
chr5 (75-123)||(24565573-24565621)
chr5 (75-123)||(24606609-24606657)
[»] chr8 (16 HSPs)
chr8 (63-123)||(4402275-4402335)
chr8 (79-126)||(202574-202621)
chr8 (79-126)||(317411-317458)
chr8 (81-123)||(40599887-40599929)
chr8 (74-123)||(9277196-9277245)
chr8 (76-129)||(26847091-26847144)
chr8 (76-121)||(36180689-36180734)
chr8 (79-131)||(42094748-42094800)
chr8 (70-130)||(42663992-42664052)
chr8 (64-123)||(31713396-31713455)
chr8 (76-123)||(31713869-31713916)
chr8 (76-123)||(36182122-36182169)
chr8 (79-126)||(42094006-42094053)
chr8 (35-124)||(9929199-9929288)
chr8 (75-124)||(22632968-22633017)
chr8 (75-123)||(16911046-16911094)
[»] chr1 (11 HSPs)
chr1 (72-118)||(2260858-2260904)
chr1 (75-124)||(26240113-26240162)
chr1 (75-124)||(26240871-26240920)
chr1 (77-122)||(51198577-51198622)
chr1 (79-123)||(16449555-16449599)
chr1 (79-123)||(16459129-16459173)
chr1 (73-125)||(24848424-24848476)
chr1 (79-130)||(39682312-39682363)
chr1 (73-123)||(24847783-24847833)
chr1 (76-125)||(2261544-2261593)
chr1 (75-123)||(35015627-35015674)
[»] chr6 (3 HSPs)
chr6 (74-123)||(2741398-2741447)
chr6 (76-124)||(13084880-13084928)
chr6 (76-125)||(2138475-2138524)
[»] scaffold0340 (1 HSPs)
scaffold0340 (75-128)||(10046-10098)


Alignment Details
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 20606885 - 20606970
Alignment:
Q  39 cttgattgatctaacggctttcaattgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    |||||||||||||| |||| | |||| ||||||| | |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  20606885 cttgattgatctaatggctcttaattattgtttatagtggttcaccggtgagggacttaattgaaccctcaccctagaattcacct 20606970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 40584333 - 40584418
Alignment:
Q  39 cttgattgatctaacggctttcaattgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    |||||||||||||| |||| |||||| ||||| |   ||||||||||||||||||| |  |||||||||||||||| |||||||||    
T  40584333 cttgattgatctaatggctctcaattattgttaacggtggttcaccggtgagggacctagttgaaccctcaccctataattcacct 40584418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 4879115 - 4879056
Alignment:
Q  64 tgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||| |||| |||||| ||||| ||||||||||||| ||||| |||||||||||| ||||    
T  4879115 tgttttttataatggtccaccgatgagggacttgttagaaccttcaccctagaatccacc 4879056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 44297423 - 44297461
Alignment:
Q  84 cggtgagggacttgtttgaaccctcaccctagaattcac 122  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  44297423 cggtgagggacttaattgaaccctcaccctagaattcac 44297461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 127739 - 127784
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    ||||||||||| ||||||  |||||||||||||||||||| |||||    
T  127739 ttcaccggtgaaggacttaattgaaccctcaccctagaatccacct 127784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 9157075 - 9157014
Alignment:
Q  63 ttgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    |||||||| ||| |||||||||||||||||| ||  | |||||||| ||||||||| |||||    
T  9157075 ttgttgttcaaagtggttcaccggtgagggatttaatagaaccctcgccctagaatccacct 9157014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 10173996 - 10173935
Alignment:
Q  63 ttgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    |||||||| ||  |||||||||||||||||||||    |||||||||||||||||| |||||    
T  10173996 ttgttgttcaaggtggttcaccggtgagggacttaacagaaccctcaccctagaatccacct 10173935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 44986856 - 44986812
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||| ||||||||||  |||| ||||||||||||||||||||    
T  44986856 ttcaccgatgagggacttaattgatccctcaccctagaattcacc 44986812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 30581230 - 30581314
Alignment:
Q  39 cttgattgatctaacggctttcaattgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||||||||||||| |||| | |||| ||||||| | |||||||| ||||||||||||  |||||||||||||||||||||||||    
T  30581230 cttgattgatctaatggctcttaattattgtttatagtggttcactggtgagggacttaattgaaccctcaccctagaattcacc 30581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 36611598 - 36611555
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaatt 119  Q
    |||||||||||||||||||||  |||||||||||||||||||||    
T  36611598 tggttcaccggtgagggacttaattgaaccctcaccctagaatt 36611555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 36611696 - 36611782
Alignment:
Q  33 tgtgaacttgattgatctaacggctttcaattgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaatt 119  Q
    |||| |||||||| ||||||||  | | |||||||||||| | |||||||| | ||||||||||  |||||||||||||||| ||||    
T  36611696 tgtgcacttgattaatctaacgattcttaattgttgtttacagtggttcactgatgagggacttaattgaaccctcaccctaaaatt 36611782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 42818559 - 42818601
Alignment:
Q  81 caccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  42818559 caccggtgagggacttaattgaaccctcaccctagaattcacc 42818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 2403445 - 2403490
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||||    
T  2403445 ttcaccggtgagggacttagttgaaccctcatcctagaattcacct 2403490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 46491694 - 46491737
Alignment:
Q  81 caccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    ||||||||||||||||  |||||||||||||||||||| |||||    
T  46491694 caccggtgagggacttagttgaaccctcaccctagaatccacct 46491737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 37783441 - 37783527
Alignment:
Q  35 tgaacttgattgatctaacggctttcaattgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattca 121  Q
    ||||||||||  ||||||||  | ||||| ||||||  || |||| ||||||||||||||||  | || ||||||||||||||||||    
T  37783441 tgaacttgatcaatctaacgattctcaatagttgttccaagtggtccaccggtgagggacttagtagagccctcaccctagaattca 37783527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 3315007 - 3314955
Alignment:
Q  71 taaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||| |||| ||||||||||||||||  ||||||||||||| |||||| ||||    
T  3315007 taaagtggtacaccggtgagggacttaattgaaccctcaccgtagaatccacc 3314955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 7329074 - 7329118
Alignment:
Q  81 caccggtgagggacttgtttgaaccctcaccctagaattcacctt 125  Q
    |||| |||||||||||  ||||||||||||||||||| |||||||    
T  7329074 caccagtgagggacttaattgaaccctcaccctagaagtcacctt 7329118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 17114189 - 17114145
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||| ||||||||||  |||||||||||||||||||| ||||    
T  17114189 ttcaccgatgagggacttaattgaaccctcaccctagaatccacc 17114145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 45394065 - 45393981
Alignment:
Q  39 cttgattgatctaacggctttcaattgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||||||||||||| |||| |||||| ||||| | | |||||||||||| || |||||  |||||||||||| ||||||||||||    
T  45394065 cttgattgatctaatggctctcaattattgttaatagtggttcaccggtaagagacttaattgaaccctcactctagaattcacc 45393981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 44842045 - 44841921
Alignment:
Q  2 aaatctagtacatatagagtaaaatatgatttgtgaacttgattgatctaacggctttcaattgttgtttaaaatggttcaccggtgagggacttgtttg 101  Q
    ||||||||| |||| || ||| ||||  || ||||| |||||||||||||| |||| |||||| |||||||  |||| |||  | ||||||||||  |||    
T  44842045 aaatctagtgcatagagtgtataatagaatgtgtgagcttgattgatctaatggctctcaattattgtttatgatggctcattgttgagggacttaattg 44841946  T
Q  102 aaccctcaccctagaattcaccttt 126  Q
    |||  ||| ||||||||||||||||    
T  44841945 aactttcatcctagaattcaccttt 44841921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 26764283 - 26764346
Alignment:
Q  61 aattgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    |||||||||||| | |||| ||||||||||||| ||| | ||||||||||| ||||||||||||    
T  26764283 aattgttgtttatagtggtccaccggtgagggatttgatagaaccctcaccttagaattcacct 26764346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 53601539 - 53601574
Alignment:
Q  124 tttaaaaagacataataatttatttatgtatctctt 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  53601539 tttaaaaagacataataatttatttatgtatctctt 53601574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 32138766 - 32138887
Alignment:
Q  3 aatctagtacatatagagtaaaatatgatttgtgaacttgattgatctaacggctttcaattgttgtttaaaatggttcaccggtgagggacttgtttga 102  Q
    ||||||||| |||||| ||| |||| ||| ||||||||||||| |||||| || | | ||||||||| || | |||| |||||||||| || ||| | ||    
T  32138766 aatctagtatatatagtgtagaataggatatgtgaacttgattaatctaatgg-tcttaattgttgtctatagtggtccaccggtgagtgatttgataga 32138864  T
Q  103 accctcaccctagaattcacctt 125  Q
     |||||||| |||||| ||||||    
T  32138865 gccctcaccttagaatccacctt 32138887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 14527577 - 14527626
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaattcacctt 125  Q
    |||||||||||||||||||||  |||| ||||||||||||||| ||||||    
T  14527577 tggttcaccggtgagggacttaattgatccctcaccctagaatccacctt 14527626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 24666177 - 24666129
Alignment:
Q  75 atggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||||||||||||||||||  |||| ||||||||||||||| ||||    
T  24666177 atggttcaccggtgagggacttaattgatccctcaccctagaatccacc 24666129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 6056948 - 6057047
Alignment:
Q  24 aatatgatttgtgaacttgattgatctaacggctttcaattgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||| || ||||||||||||| || ||| || | | ||| ||||||  || |||| ||||||||||||||||  | |||||||||||||||||| ||||    
T  6056948 aatatcatatgtgaacttgattaatttaatggttcttaatggttgttcgaagtggtccaccggtgagggacttagtagaaccctcaccctagaatccacc 6057047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 34450857 - 34450814
Alignment:
Q  81 caccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    ||||||||||||||||  |||| |||||||||||||||||||||    
T  34450857 caccggtgagggacttaattgatccctcaccctagaattcacct 34450814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 5228537 - 5228599
Alignment:
Q  61 aattgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||| ||||||| |||||||||||||||| ||| ||  |||||| ||||||||| ||||||||    
T  5228537 aattattgtttataatggttcaccggtgatggatttaattgaacactcaccctaaaattcacc 5228599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 47157385 - 47157427
Alignment:
Q  81 caccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||||||||| ||  |||||||||||||||||||||||||    
T  47157385 caccggtgagggatttaattgaaccctcaccctagaattcacc 47157427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 47156675 - 47156634
Alignment:
Q  81 caccggtgagggacttgtttgaaccctcaccctagaattcac 122  Q
    ||||| ||||||||||  ||||||||||||||||||||||||    
T  47156675 caccgatgagggacttaattgaaccctcaccctagaattcac 47156634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 18745371 - 18745423
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaattcacctttaa 128  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  18745371 tggtgcaccggtgagggacttgattgaaccctcaccctagaattcaccattaa 18745423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 53343856 - 53343904
Alignment:
Q  75 atggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  53343856 atggatcaccggtgagggacttgtttgaaccctcaccctagaatccacc 53343904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 54308500 - 54308458
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaat 118  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  54308500 tggttcaccggtgagggacttaattgaaccctcaccctagaat 54308458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 20807986 - 20807937
Alignment:
Q  74 aatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||||| ||||||||||||||||  |||||||||||||||||||| ||||    
T  20807986 aatggtacaccggtgagggacttaattgaaccctcaccctagaatccacc 20807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 20808606 - 20808655
Alignment:
Q  74 aatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||||| ||||||||||||||||  |||||||||||||||||||| ||||    
T  20808606 aatggtacaccggtgagggacttacttgaaccctcaccctagaatccacc 20808655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 47571943 - 47571996
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacctttaaaaag 132  Q
    ||||||||||||||||||  |||| |||||||||||||||||||| || |||||    
T  47571943 ttcaccggtgagggacttaattgatccctcaccctagaattcaccgttcaaaag 47571996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 53344745 - 53344790
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||    
T  53344745 ttcaccggtgagggacttgattgatccctcaccctagaatccacct 53344790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 49350270 - 49350318
Alignment:
Q  75 atggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||||||||||| |||||||||  |||||||||||||||||||| ||||    
T  49350270 atggttcaccggcgagggacttaattgaaccctcaccctagaatccacc 49350318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 4706954 - 4707004
Alignment:
Q  73 aaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||| ||||||||||||||||  | |||||||||||||||||| ||||    
T  4706954 aaatggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 4707004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 15288282 - 15288335
Alignment:
Q  70 ttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||| |||||||| |||||||| ||||  ||||| |||||||||||||||||||    
T  15288282 ttaagatggttcatcggtgaggaacttaattgaatcctcaccctagaattcacc 15288335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 18744667 - 18744622
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaattca 121  Q
    |||| ||||||||||||||||| || |||||||| |||||||||||    
T  18744667 tggtgcaccggtgagggacttgattaaaccctcatcctagaattca 18744622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 47808406 - 47808361
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    |||| |||||||||||||| |||| ||||||||||||||| |||||    
T  47808406 ttcatcggtgagggacttgattgatccctcaccctagaatccacct 47808361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 9830625 - 9830577
Alignment:
Q  70 ttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaat 118  Q
    |||| ||||| ||||||||||||||||  |||||||||||||| |||||    
T  9830625 ttaagatggtccaccggtgagggacttaattgaaccctcacccgagaat 9830577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 29516555 - 29516595
Alignment:
Q  81 caccggtgagggacttgtttgaaccctcaccctagaattca 121  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  29516555 caccggtgagggacttaattgaaccctcaccgtagaattca 29516595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 47571240 - 47571196
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||||||||||||||  |||| ||||||||||||||| ||||    
T  47571240 ttcaccggtgagggacttaattgatccctcaccctagaatccacc 47571196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 47677570 - 47677526
Alignment:
Q  74 aatggttcaccggtgagggacttgtttgaaccctcaccctagaat 118  Q
    ||||||||||| |||||||||||  ||||||||||| ||||||||    
T  47677570 aatggttcaccagtgagggacttaattgaaccctcatcctagaat 47677526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 49349720 - 49349676
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||||||||||||||  |||| ||||||||||||||| ||||    
T  49349720 ttcaccggtgagggacttaattgatccctcaccctagaatccacc 49349676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 53346502 - 53346546
Alignment:
Q  81 caccggtgagggacttgtttgaaccctcaccctagaattcacctt 125  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||    
T  53346502 caccggtgagggacttaattgaaccctcactgtagaattcacctt 53346546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 15561509 - 15561415
Alignment:
Q  24 aatatgatttgtgaacttgattgatctaacggctttcaattgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaat 118  Q
    ||||| || ||||||||||||| |||||| || | ||||| ||||||  ||||||| ||||||||||||||||  | || |||||||||||||||    
T  15561509 aatatcatatgtgaacttgattaatctaatggttctcaatggttgttcgaaatggtccaccggtgagggacttagtagagccctcaccctagaat 15561415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 33087470 - 33087514
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||||||||||||||| |||| |||||| |||||||||||||    
T  33087470 ttcaccggtgagggacttgattgatccctcatcctagaattcacc 33087514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 39466932 - 39466884
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    |||| ||||||||||||||||  ||| ||||||||||||||||||||||    
T  39466932 tggtccaccggtgagggacttaattggaccctcaccctagaattcacct 39466884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 2029051 - 2029098
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcaccttt 126  Q
    ||||||||||||||||||  |||| ||||||||||||||| |||||||    
T  2029051 ttcaccggtgagggacttaattgagccctcaccctagaatccaccttt 2029098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 23253487 - 23253534
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||||||||||||||||||||  ||| |||||||||||||||| ||||    
T  23253487 tggttcaccggtgagggacttaattggaccctcaccctagaatccacc 23253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 24565621 - 24565573
Alignment:
Q  75 atggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||| ||||||||||||| ||  |||||||||||||||||||| ||||    
T  24565621 atggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24565573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 24606657 - 24606609
Alignment:
Q  75 atggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||| ||||||||||||| ||  |||||||||||||||||||| ||||    
T  24606657 atggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24606609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 4402275 - 4402335
Alignment:
Q  63 ttgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||||||| ||| |||||||||||||||||||||  | |||||||||||||||||| ||||    
T  4402275 ttgttgttcaaagtggttcaccggtgagggacttaatagaaccctcaccctagaatccacc 4402335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 202621 - 202574
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcaccttt 126  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  202621 ttcaccggtgagggacttaattgaaccctcatcctagaattcaccttt 202574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 317458 - 317411
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcaccttt 126  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  317458 ttcaccggtgagggacttaattgaaccctcatcctagaattcaccttt 317411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 40599929 - 40599887
Alignment:
Q  81 caccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  40599929 caccggtgagggacttgtttgaaccctcatcctagaatccacc 40599887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 9277245 - 9277196
Alignment:
Q  74 aatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||||| ||||| ||||||||||||| |||||||||||||||||| ||||    
T  9277245 aatggtccaccgatgagggacttgttagaaccctcaccctagaatccacc 9277196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 26847144 - 26847091
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaattcacctttaaa 129  Q
    |||||||||||||||||||||  ||| |||||||||||||||| ||||| ||||    
T  26847144 tggttcaccggtgagggacttaattggaccctcaccctagaatccacctctaaa 26847091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 36180734 - 36180689
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaattca 121  Q
    |||||||||||||||||||||  || ||||||||||||||||||||    
T  36180734 tggttcaccggtgagggacttaattaaaccctcaccctagaattca 36180689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 42094748 - 42094800
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacctttaaaaa 131  Q
    |||| |||||||||||||  |||| |||||||||||||||||||||| |||||    
T  42094748 ttcatcggtgagggacttaattgatccctcaccctagaattcaccttaaaaaa 42094800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 42663992 - 42664052
Alignment:
Q  70 ttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacctttaaaa 130  Q
    |||| ||||| |||| |||||||||||  |||||||||||||||| |||||||||| ||||    
T  42663992 ttaagatggtccaccagtgagggacttaattgaaccctcaccctaaaattcaccttaaaaa 42664052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 31713455 - 31713396
Alignment:
Q  64 tgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||| |||| |||||| ||||| ||||||||||||| ||||| |||||||||||| ||||    
T  31713455 tgttttttataatggtccaccgatgagggacttgttagaaccttcaccctagaatccacc 31713396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 31713869 - 31713916
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||| ||| ||||||||||||||| |||||||||||||||||| ||||    
T  31713869 tggtccacgggtgagggacttgttagaaccctcaccctagaatccacc 31713916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 36182122 - 36182169
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||||||||||||||||||||  |||||||||| || |||||||||||    
T  36182122 tggttcaccggtgagggacttaattgaaccctcgccatagaattcacc 36182169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 42094053 - 42094006
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcaccttt 126  Q
    ||||||||||||||||||  |||| ||||||||||||||| |||||||    
T  42094053 ttcaccggtgagggacttaattgatccctcaccctagaatccaccttt 42094006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 9929288 - 9929199
Alignment:
Q  35 tgaacttgattgatctaacggctttcaattgttgtttaaaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    ||||||||||  ||||||||  | ||||| ||||||  || |||| ||||||||||||||||  | || |||||||| ||||||||||||    
T  9929288 tgaacttgatcaatctaacgattctcaatagttgttccaagtggtccaccggtgagggacttagtagagccctcaccttagaattcacct 9929199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 22632968 - 22633017
Alignment:
Q  75 atggttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    ||||| ||||||||||||||||  |||| ||||||||||||||| |||||    
T  22632968 atggtccaccggtgagggacttaattgatccctcaccctagaatccacct 22633017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 16911046 - 16911094
Alignment:
Q  75 atggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||| ||||||||||||||||  |||| ||||||||||||||| ||||    
T  16911046 atggtacaccggtgagggacttaattgagccctcaccctagaatccacc 16911094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 2260904 - 2260858
Alignment:
Q  72 aaaatggttcaccggtgagggacttgtttgaaccctcaccctagaat 118  Q
    ||||||||  |||||||||||||||| ||||||||||||||||||||    
T  2260904 aaaatggtataccggtgagggacttgattgaaccctcaccctagaat 2260858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 26240162 - 26240113
Alignment:
Q  75 atggttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    ||||||||||||||||||||||  |||| ||||||||||||||| |||||    
T  26240162 atggttcaccggtgagggacttaattgatccctcaccctagaatccacct 26240113  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 26240871 - 26240920
Alignment:
Q  75 atggttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| |||||    
T  26240871 atggtccaccggtgagggacttaattgaaccctcaccctagaatccacct 26240920  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 51198622 - 51198577
Alignment:
Q  77 ggttcaccggtgagggacttgtttgaaccctcaccctagaattcac 122  Q
    |||||||| |||| |||||| |||||||||||||||||||||||||    
T  51198622 ggttcaccagtgacggacttctttgaaccctcaccctagaattcac 51198577  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 16449599 - 16449555
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||    
T  16449599 ttcaccggtgagggacttaattgaaccctcaccctagaatccacc 16449555  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 16459173 - 16459129
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||    
T  16459173 ttcaccggtgagggacttaattgaaccctcaccctagaatccacc 16459129  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 24848424 - 24848476
Alignment:
Q  73 aaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacctt 125  Q
    ||||||| ||||||||||||||||  | |||||||||||||||||| ||||||    
T  24848424 aaatggtacaccggtgagggacttaatagaaccctcaccctagaatccacctt 24848476  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 39682363 - 39682312
Alignment:
Q  79 ttcaccggtgagggacttgtttgaaccctcaccctagaattcacctttaaaa 130  Q
    ||||||||||| ||||||| | || ||||||||||||||| |||||||||||    
T  39682363 ttcaccggtgaaggacttgatagagccctcaccctagaatccacctttaaaa 39682312  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 24847833 - 24847783
Alignment:
Q  73 aaatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||| ||||||||||||||||  | |||||||||||||||||| ||||    
T  24847833 aaatggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 24847783  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 2261544 - 2261593
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaattcacctt 125  Q
    |||||||| |||||||| |||  |||||||||||||||| ||||||||||    
T  2261544 tggttcactggtgaggggcttaattgaaccctcaccctaaaattcacctt 2261593  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 35015627 - 35015674
Alignment:
Q  75 atggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||| ||||    
T  35015627 atggttcac-ggtgagggacttggttggaccctcaccctagaatccacc 35015674  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 2741398 - 2741447
Alignment:
Q  74 aatggttcaccggtgagggacttgtttgaaccctcaccctagaattcacc 123  Q
    |||||||||||||||||||||||| || |||| ||||| |||||||||||    
T  2741398 aatggttcaccggtgagggacttgattaaaccatcaccttagaattcacc 2741447  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 13084880 - 13084928
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaattcacct 124  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||||||    
T  13084880 tggtacaccggtgagagacttagttgaaccctcaccctagaattcacct 13084928  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 2138524 - 2138475
Alignment:
Q  76 tggttcaccggtgagggacttgtttgaaccctcaccctagaattcacctt 125  Q
    |||| |||||||||||||| |  ||| |||||||||||||||||||||||    
T  2138524 tggtccaccggtgagggacctaattggaccctcaccctagaattcacctt 2138475  T

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Target: scaffold0340 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 10046 - 10098
Alignment:
Q  75 atggttcaccggtgagggacttgtttgaaccctcaccctagaattcacctttaa 128  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||| |||| ||||    
T  10046 atggttcac-ggtgagggacttggttggaccctcaccctagaatccacccttaa 10098  T

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