View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15888_high_19 (Length: 227)
Name: NF15888_high_19
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15888_high_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 18499609 - 18499412
Alignment:
| Q |
18 |
cttctctgtcattcataaaaattttcttataa-gctaatcacgatgatcaaatctcttctgagtatgaacaaaaactttctctacgcactgttgtttctt |
116 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18499609 |
cttctctgtcattcatacaatttttcttataaagctaatcacgatgatcaaatctcttctgagtatgaacaaaaactttctctacgcactgttgtttctt |
18499510 |
T |
|
| Q |
117 |
cttcttctaccaaacaacgttactgcttcaatccatcactactccaaccaacccttccatcccaaatgagatttaatttgctgtgacccattcatctc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
18499509 |
cttcttctaccaaacaacgttactgcttcaatccatcactactccaaccaacccttccatctcaaatgagatttactttgctgtgacccattcctctc |
18499412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 205214 - 205275
Alignment:
| Q |
112 |
ttcttcttcttctaccaaacaacgttactgcttcaatccatcactactccaaccaacccttc |
173 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
205214 |
ttcttctttttctaccaaacaatgttcacgcttcaatccattactactccaaacaacccttc |
205275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 320051 - 320112
Alignment:
| Q |
112 |
ttcttcttcttctaccaaacaacgttactgcttcaatccatcactactccaaccaacccttc |
173 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
320051 |
ttcttctttttctaccaaacaatgttcacgcttcaatccattactactccaaacaacccttc |
320112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University