View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15888_high_3 (Length: 503)
Name: NF15888_high_3
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15888_high_3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 140 - 503
Target Start/End: Complemental strand, 48171825 - 48171462
Alignment:
| Q |
140 |
tttctaccaaatcctccacaggcacatcaatttgagagaaatcaccaatcacaacttcatcttctggattcccacccaccaactcttggttcagtaaatc |
239 |
Q |
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| T |
48171825 |
tttctaccaaatcctccacaggcacatcaatttgagagaaatcaccaatcacaacttcatcttctggattcccacccaccaactcttggttcagtaaatc |
48171726 |
T |
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| Q |
240 |
ctcccacacagcatcgcccaaattactctcattaccagttggaactgaactcaatgcagtgtagtccttaacttcactgcttgattcattatcataagca |
339 |
Q |
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| T |
48171725 |
ctcccacacagcatcacccaaattactctcattaccagttggaactgaactcaatgcagtgtagtccttaacttcactgcttgattcattatcataagca |
48171626 |
T |
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| Q |
340 |
cttaacagtgtctccatctcagactcaatagtagtcaaaccctcttgctgttcttgacaagagtaatcgaccacagattcaattggcacagcccttatag |
439 |
Q |
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| T |
48171625 |
cttaacagtgtctccatctcagactcaatagtagtcaaaccctcttgctgttcttgacaagagtaatcaaccacagattcaattggcacagcccttatag |
48171526 |
T |
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| Q |
440 |
ctccagaatcaatttgcaaattctccaaactcgaattagctgtgagcctccgttttcgcttcat |
503 |
Q |
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| T |
48171525 |
ctccagaatcattttgcaaattctccaaactcaaactagctgtgagcctccgttttcgcttcat |
48171462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 48171646 - 48171789
Alignment:
| Q |
1 |
gcagtgaagttaaggactacactgcattgagttcagttccaactggtaatgagagtaatttgggcgatgctgtgtgggaggatttactgaaccaagagtt |
100 |
Q |
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| T |
48171646 |
gcagtgaagttaaggactacactgcattgagttcagttccaactggtaatgagagtaatttgggtgatgctgtgtgggaggatttactgaaccaagagtt |
48171745 |
T |
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| Q |
101 |
ggtgggtgggaatccagaagatgaagttgtgattggtgatttct |
144 |
Q |
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| T |
48171746 |
ggtgggtgggaatccagaagatgaagttgtgattggtgatttct |
48171789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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