View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15888_high_6 (Length: 423)
Name: NF15888_high_6
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15888_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 3 - 423
Target Start/End: Complemental strand, 22088150 - 22087727
Alignment:
| Q |
3 |
cataggagcagatgattatgatttnnnnnnntgcaaaggaatgatataaattactgttttaaaaattatacagtttcaacaactgcaaaatttgtctgca |
102 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
22088150 |
cataagagcagatgattatgatttagaaaaatgcaaaggaatgatataaattactgctttaaaaattatacagcgtcaacaactgcgaaatttgtctgca |
22088051 |
T |
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| Q |
103 |
tttggtagcatttcttgtaactgttaaatttgtccataacttcttttgcattatttctaaaaggtagatatctgatattgaaattatgcagactatggtt |
202 |
Q |
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| T |
22088050 |
tttggtagcatctctagtaactgttaaatttttccataacttctttggcattatttctgaaaggtagatatctgatattgaaattatgcagactatggtt |
22087951 |
T |
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| Q |
203 |
gagatagaagatataaaccaaagaaataatactacatacacaagcatccaaaagaagtattc--aaaattcataaaaccgttataccagaataaataaaa |
300 |
Q |
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|||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||| |
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| T |
22087950 |
gagatataagttgtaaaccaaagaaataatactacatacacaagcatccaaaagaagtattcaaaaaattcataaaaccattctaccaaaataaataaaa |
22087851 |
T |
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| Q |
301 |
tgataacacggctaagttgtttcaaaataccgtcgactaaactaaataaaatgataacgcgactaagttgtgtcataataccatagactaaactttcaat |
400 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |
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| T |
22087850 |
tgataacgtggctaagttgtttcaaaataccgtcgactaaactaaataaaatgatagcgcgactaagttgtgtcatagtactgcagactaaactttcaat |
22087751 |
T |
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| Q |
401 |
cc-aaaaatataatatagtagact |
423 |
Q |
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|| ||||| ||||||||||||||| |
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| T |
22087750 |
ccaaaaaaaataatatagtagact |
22087727 |
T |
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