View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15888_high_9 (Length: 359)

Name: NF15888_high_9
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15888_high_9
NF15888_high_9
[»] chr6 (1 HSPs)
chr6 (82-342)||(21350322-21350571)
[»] chr7 (2 HSPs)
chr7 (254-342)||(32498369-32498457)
chr7 (294-342)||(15134458-15134506)
[»] chr4 (3 HSPs)
chr4 (254-342)||(49480573-49480661)
chr4 (279-342)||(43460597-43460660)
chr4 (279-339)||(26335998-26336058)
[»] chr1 (2 HSPs)
chr1 (89-149)||(35123880-35123940)
chr1 (279-342)||(19534069-19534132)
[»] chr3 (1 HSPs)
chr3 (284-342)||(22272365-22272423)
[»] scaffold0126 (1 HSPs)
scaffold0126 (250-342)||(34468-34560)
[»] chr8 (1 HSPs)
chr8 (255-339)||(20104370-20104454)
[»] chr5 (1 HSPs)
chr5 (298-342)||(25744726-25744770)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 82 - 342
Target Start/End: Complemental strand, 21350571 - 21350322
Alignment:
Q  82 taattatttttgcaagaaaattgttatattcattatcccagcttgttggaagaaactgcagggaagaagaagaaccaagtagcaggaattcattttaaaa 181  Q
    |||||||||||  |||| |||||||||||| |||||| ||||||||||||||||  |||||||||||||||||| |||     ||       ||||  ||    
T  21350571 taattattttta-aagataattgttatattgattatcacagcttgttggaagaatttgcagggaagaagaagaatcaa-----ag-------ttttcgaa 21350485  T
Q  182 tttggaggagaaaagcgtacagaaag-aggcacataagaaataaaatctagtgcaggtgcaatggac-agggatgttttaatctgtaccgtacactttga 279  Q
    ||||||||| |||| |||| || ||| ||||||||| |||||||||| | ||||| ||||||||||| | || ||||||||| |||||||||||||||||    
T  21350484 tttggaggaaaaaaacgtataggaaggaggcacataggaaataaaatatggtgcaagtgcaatggactatggttgttttaatatgtaccgtacactttga 21350385  T
Q  280 tctaatggctattatttagtgctcttaccctcttataataaccactcctctcatttgatacat 342  Q
    |||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||    
T  21350384 tctaatggttattatttagtgctctcaccctctcataataaccactcctcgcatttgatacat 21350322  T

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Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 32498369 - 32498457
Alignment:
Q  254 gttttaatctgtaccgtacactttgatctaatggctattatttagtgctcttaccctcttataataaccactcctctcatttgatacat 342  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||||||| |||||||||||||||    
T  32498369 gttttaatctgtaccgtacactttgatctaatggctattattcagtactctcaccctctcataataaccactcatctcatttgatacat 32498457  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 15134458 - 15134506
Alignment:
Q  294 tttagtgctcttaccctcttataataaccactcctctcatttgatacat 342  Q
    ||||||||||| ||||||| | |||| ||||||||||||||||| ||||    
T  15134458 tttagtgctctcaccctctcacaatatccactcctctcatttgaaacat 15134506  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 49480573 - 49480661
Alignment:
Q  254 gttttaatctgtaccgtacactttgatctaatggctattatttagtgctcttaccctcttataataaccactcctctcatttgatacat 342  Q
    ||||||||||| |||||||| ||| ||| | |||  |||||||||| |||| ||||||| | |||||||||||||||||||| ||||||    
T  49480573 gttttaatctgcaccgtacagtttaatcaagtggtcattatttagtactctcaccctctcacaataaccactcctctcatttaatacat 49480661  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 43460660 - 43460597
Alignment:
Q  279 atctaatggctattatttagtgctcttaccctcttataataaccactcctctcatttgatacat 342  Q
    |||||||||||||||||| || |||| ||||||| || |||||   ||||||||||||||||||    
T  43460660 atctaatggctattatttggtcctctcaccctctcattataacacttcctctcatttgatacat 43460597  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 26336058 - 26335998
Alignment:
Q  279 atctaatggctattatttagtgctcttaccctcttataataaccactcctctcatttgata 339  Q
    |||||||||||||||||| || |||| ||||||| || |||||   |||||||||||||||    
T  26336058 atctaatggctattatttggtcctctcaccctctcattataacacttcctctcatttgata 26335998  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 35123880 - 35123940
Alignment:
Q  89 ttttgcaagaaaattgttatattcattatcccagcttgttggaagaaactgcagggaagaa 149  Q
    |||||||||| ||||||||| || |||||| ||||||||||||||||| ||||||||||||    
T  35123880 ttttgcaagataattgttatgttgattatcacagcttgttggaagaaattgcagggaagaa 35123940  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 19534132 - 19534069
Alignment:
Q  279 atctaatggctattatttagtgctcttaccctcttataataaccactcctctcatttgatacat 342  Q
    |||| |||| ||||||||| | |||| ||||||| ||||||| |||||||||||||||| ||||    
T  19534132 atctgatggttattatttactcctctcaccctctcataataatcactcctctcatttgaaacat 19534069  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 22272365 - 22272423
Alignment:
Q  284 atggctattatttagtgctcttaccctcttataataaccactcctctcatttgatacat 342  Q
    |||||||||| ||| | || | ||||||| ||||||||||||||||||| |||||||||    
T  22272365 atggctattacttactcctttcaccctctcataataaccactcctctcacttgatacat 22272423  T

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Target: scaffold0126 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 342
Target Start/End: Original strand, 34468 - 34560
Alignment:
Q  250 ggatgttttaatctgtaccgtacactttgatctaatgg-ctattatttagtgctcttaccctcttataataaccactcctctcatttgatacat 342  Q
    |||| |||||||||| ||| | || || |||||||||| |||| ||||| | |||| ||||||| | |||||||||||||||||||| ||||||    
T  34468 ggatcttttaatctgcaccattcatttagatctaatggtctat-atttactcctctcaccctctcacaataaccactcctctcatttaatacat 34560  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 20104454 - 20104370
Alignment:
Q  255 ttttaatctgtaccgtacactttgatctaatggctattatttagtgctcttaccctcttataataaccactcctctcatttgata 339  Q
    |||||||||| |||||||| ||||||||||   ||  |||||| |||||| | ||||| |||||||  | |||||||||||||||    
T  20104454 ttttaatctgcaccgtacaatttgatctaacaactgatatttattgctctcatcctctcataataaggagtcctctcatttgata 20104370  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 25744770 - 25744726
Alignment:
Q  298 gtgctcttaccctcttataataaccactcctctcatttgatacat 342  Q
    ||||||| ||||||| | |||||||||||||||||||||| ||||    
T  25744770 gtgctctcaccctctcacaataaccactcctctcatttgaaacat 25744726  T

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