View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15888_low_12 (Length: 322)
Name: NF15888_low_12
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15888_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 2700609 - 2700909
Alignment:
| Q |
11 |
cataggacaagaagatagcccatagaagagtatagcaccacacatta----tatatcttttactaattaaggaccaacataattagcatcacaaaactat |
106 |
Q |
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| T |
2700609 |
cataggacaacaagatagcacatacaagagtatagcaccacacattaattatatatcttttactaattaaggaccaacataattagcatcacaaaactat |
2700708 |
T |
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| Q |
107 |
ggttttaggttaaacaaatctaataattgccaattaattataacaacaacaataacaacnnnnnnntctaatttaaattttattgaaaaacatctatgtt |
206 |
Q |
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| T |
2700709 |
ggttttaggctaaacaaatctaataattgccaattaaatataacaacaacaataacaacaaaaaaatctaatttaaattttattgaaaaacatctatgtt |
2700808 |
T |
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| Q |
207 |
ttgtaaaacatactcacaaaacaactaaagttaataaggttacctgataaagcattgagaccattgaaacaagttttaaggaatgatgtggtgacattgt |
306 |
Q |
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| T |
2700809 |
ttgtaaaacatactcacaaaacaactaaagttaataaggttacctgataaagcattgagaccattgaaacaagttttaaggaatgatgtggtgacattgt |
2700908 |
T |
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| Q |
307 |
t |
307 |
Q |
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| T |
2700909 |
t |
2700909 |
T |
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Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 10843382 - 10843458
Alignment:
| Q |
222 |
acaaaacaactaaagttaataaggttacctgataaagcattgagaccattgaaacaagttttaaggaatgatgtggt |
298 |
Q |
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| T |
10843382 |
acaaaacaactagggttaataaggttacctgttaaagcattgagaccattgaaacaagttttaaggaaagaagtggt |
10843458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 10843231 - 10843325
Alignment:
| Q |
52 |
acattatatatcttttactaattaa-ggaccaacataattagcatcacaaaactatggttttaggttaaacaaatctaataattgccaattaatt |
145 |
Q |
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| T |
10843231 |
acattatatatcttttattaatttgtggaccaacataattatcatcacaaatctctggttttaggctaatctaatccattaactgtcaattaatt |
10843325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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