View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15888_low_13 (Length: 310)

Name: NF15888_low_13
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15888_low_13
NF15888_low_13
[»] chr5 (5 HSPs)
chr5 (1-296)||(20321849-20322144)
chr5 (82-296)||(15450989-15451203)
chr5 (97-222)||(30997676-30997801)
chr5 (25-225)||(9281475-9281675)
chr5 (57-152)||(9844876-9844971)
[»] chr1 (5 HSPs)
chr1 (2-296)||(32610511-32610811)
chr1 (79-296)||(52779973-52780190)
chr1 (89-215)||(2361866-2361992)
chr1 (57-137)||(40336378-40336458)
chr1 (58-152)||(47705286-47705380)
[»] chr3 (9 HSPs)
chr3 (110-296)||(10545548-10545734)
chr3 (79-296)||(12298693-12298910)
chr3 (94-296)||(8838342-8838544)
chr3 (88-218)||(44666358-44666488)
chr3 (79-152)||(19584625-19584698)
chr3 (183-266)||(5686772-5686855)
chr3 (124-266)||(5665331-5665473)
chr3 (68-114)||(10560346-10560392)
chr3 (37-105)||(18962714-18962782)
[»] chr6 (3 HSPs)
chr6 (186-296)||(5918612-5918722)
chr6 (89-215)||(14817107-14817233)
chr6 (43-192)||(34069034-34069183)
[»] scaffold0329 (1 HSPs)
scaffold0329 (79-296)||(13302-13519)
[»] chr4 (4 HSPs)
chr4 (91-296)||(22645667-22645872)
chr4 (89-296)||(10869191-10869398)
chr4 (89-296)||(10655046-10655253)
chr4 (235-296)||(19799193-19799254)
[»] chr8 (2 HSPs)
chr8 (88-296)||(19996466-19996674)
chr8 (175-289)||(15885179-15885293)
[»] scaffold0655 (1 HSPs)
scaffold0655 (57-122)||(21-86)
[»] chr7 (2 HSPs)
chr7 (58-152)||(38845207-38845301)
chr7 (57-284)||(8854506-8854733)
[»] chr2 (1 HSPs)
chr2 (94-137)||(28154382-28154425)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 20322144 - 20321849
Alignment:
Q  1 ttgatttatcttcttcaggatctccatgttacctgcatcaagcttcctgtactcttctgtgacaatcaaagcggtttacatatagcagctaaccctgttt 100  Q
    |||||||| |||||||| |||||||||||||| ||||  || ||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||    
T  20322144 ttgatttaccttcttcaagatctccatgttacttgcactaaacttcctgtactattctgtgacaatcaaagtgctctacatatagcagctaaccctgttt 20322045  T
Q  101 ttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgtttcttctcaagaaca 200  Q
    |||||||| |||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||    
T  20322044 ttcatgaacgcactaaacacttggaaattgattgtcacatagtgagagaaaagctacattctggcatactcaagcttcttcctgtttcttctaaagagca 20321945  T
Q  201 ggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagcttg 296  Q
    ||| |||||||| ||||| ||| |||||||||||||||| |||||||||||| |||||||| || |||||||||| ||||||||||||||||||||    
T  20321944 ggtggctgattttttcaccaaatctcttcatcctcaaccttttaatcttcttctatccaagttgagcttgttagacatttaccaacctccagcttg 20321849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 82 - 296
Target Start/End: Original strand, 15450989 - 15451203
Alignment:
Q  82 atagcagctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttc 181  Q
    ||||| ||||| || |||||||||||| | ||||| |||||||| |||||||| |||||||||||||| || || ||| ||||||| ||||| |||||||    
T  15450989 atagctgctaatccagtttttcatgaaagaaccaagcacttggacattgattgtcacatagtgagagagaagcttcatgctggcattctcaaacttcttc 15451088  T
Q  182 ctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatattta 281  Q
    |||| || ||||||||   | | || ||||||||||| ||| |||| |  ||||||||||||  | |||| |||||||||||||||||| ||||||| ||    
T  15451089 ctgtctcatctcaagattggttggcagatttcttcactaaacctctcctccctcaaccctttggtattctgttatccaagctgggcttgatagatatcta 15451188  T
Q  282 ccaacctccagcttg 296  Q
     ||||| ||| ||||    
T  15451189 tcaaccaccatcttg 15451203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 30997801 - 30997676
Alignment:
Q  97 gtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgtttcttctcaag 196  Q
    |||||||||||| |||| || || |||||||||||||| ||  | |||||||||||||| ||   ||||||  | |||||| | ||||||||||||||||    
T  30997801 gtttttcatgaacgcacaaagcatttggagattgattgtcatctggtgagagaaaaacttcaagttggcatcatgaagcttatccctgtttcttctcaag 30997702  T
Q  197 aacaggttgctgatttcttcacaaaa 222  Q
    | ||  ||||||||||||||||||||    
T  30997701 atcaaattgctgatttcttcacaaaa 30997676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 9281475 - 9281675
Alignment:
Q  25 catgttacctgcatcaagcttcctgtactcttctgtgacaatcaaagcggtttacatatagcagctaaccctgtttttcatgaatgcaccaaacacttgg 124  Q
    |||||| |||||  |||||| ||||| ||||  |||||||||||||| | | ||||||| ||  |||| ||||||||||||||  |  |||| || || |    
T  9281475 catgtttcctgctccaagctacctgtgctctattgtgacaatcaaagtgctatacatattgcttctaatcctgtttttcatgagaggcccaagcaattag 9281574  T
Q  125 agattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagc 224  Q
    |||||||||| ||  |  | |||||||| || || |||||||| ||||| || ||||| |||||||| ||||| || || |||||||| |||||||||||    
T  9281575 agattgattgtcatctgattagagaaaagctgcaatctggcatgctcaaactgcttccagtttcttcacaagaccaagtagctgattttttcacaaaagc 9281674  T
Q  225 t 225  Q
    |    
T  9281675 t 9281675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 9844971 - 9844876
Alignment:
Q  57 ctgtgacaatcaaagcggtttacatatagcagctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaa 152  Q
    ||||||||||||||||| | | |||||||||||||||||||| || |||||| |||| |||||||| || || ||||| || || || ||||||||    
T  9844971 ctgtgacaatcaaagcgctcttcatatagcagctaaccctgtgttccatgaacgcacaaaacacttagaaatagattgtcatattgttagagaaaa 9844876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 9e-70; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 2 - 296
Target Start/End: Complemental strand, 32610811 - 32610511
Alignment:
Q  2 tgatttatcttcttcaggatctccatgttacctgcatcaagcttcctgtactcttctgtgacaatcaaagcggtttacatatagcagctaaccctgtttt 101  Q
    ||||||| ||||||||||| |||| |||| | |||| ||  |||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||| ||    
T  32610811 tgatttaccttcttcaggacctccttgtttcttgcaccagacttcctatactcttttgtgacaatcaaagcgttttacacatagcagctaaccctgtatt 32610712  T
Q  102 tcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgtttcttct------caa 195  Q
    |||||||  ||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||| ||||||| ||||||| |||||| |||      |||    
T  32610711 tcatgaacacaccaaacacttggagattgattgccacatattgagggaaaagctacaatctggcgtactcaaacttcttcttgtttcctctcaagagcaa 32610612  T
Q  196 gaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagctt 295  Q
    || || |||| |||||||||||| |||||||||||||||||||| || || ||||||||||||| | ||| |||||||||||| || ||||||||| |||    
T  32610611 gagcaagttgttgatttcttcaccaaagctcttcatcctcaacctttcaaccttcttttatccacgttggacttgttagatatctatcaacctccaactt 32610512  T
Q  296 g 296  Q
    |    
T  32610511 g 32610511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 296
Target Start/End: Original strand, 52779973 - 52780190
Alignment:
Q  79 catatagcagctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttc 178  Q
    |||||||| ||||| || || ||||||||| |||||||||| ||||| ||||||||||| ||||| ||||||||  ||||  | ||||| |||||  | |    
T  52779973 catatagctgctaatccggtctttcatgaacgcaccaaacatttggaaattgattgccatatagtcagagaaaaggtacaagcaggcatcctcaaattgc 52780072  T
Q  179 ttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatat 278  Q
    | || ||||| |||||||| || || |||||||| || || |||||| | | |||| |||| || ||  |||||||||||||| |||| ||| || | ||    
T  52780073 tcccagtttcatctcaagatcaagtagctgatttttttactaaagctttgcttcctaaacctttcaacattcttttatccaagatgggattgataaacat 52780172  T
Q  279 ttaccaacctccagcttg 296  Q
    ||||||||||||| ||||    
T  52780173 ttaccaacctccatcttg 52780190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 2361866 - 2361992
Alignment:
Q  89 ctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgtttc 188  Q
    |||||||||||||||||||  |||| ||||||||||| ||||| || ||| || | ||||||||  ||||   ||| || |||||| | || ||||||||    
T  2361866 ctaaccctgtttttcatgagcgcactaaacacttggaaattgactgtcacttaattagagaaaagttacaaagtgggattctcaagttactccctgtttc 2361965  T
Q  189 ttctcaagaacaggttgctgatttctt 215  Q
    ||||||||| || || |||||||||||    
T  2361966 ttctcaagaccaagtagctgatttctt 2361992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 40336378 - 40336458
Alignment:
Q  57 ctgtgacaatcaaagcggtttacatatagcagctaaccctgtttttcatgaatgcaccaaacacttggagattgattgcca 137  Q
    ||||||||||||||| |   | |||||||| ||||| ||||| ||||||||| |||| |||||||| ||||||||||||||    
T  40336378 ctgtgacaatcaaagtgcacttcatatagctgctaatcctgtgtttcatgaacgcacaaaacacttagagattgattgcca 40336458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 47705380 - 47705286
Alignment:
Q  58 tgtgacaatcaaagcggtttacatatagcagctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaa 152  Q
    ||||| |||||||| | |||||||||| ||||||| || || ||||||||| | ||||| || || ||||||||||| ||||| || ||||||||    
T  47705380 tgtgataatcaaagtgctttacatatatcagctaatccagtctttcatgaaagaaccaagcatttagagattgattgtcacattgtcagagaaaa 47705286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 110 - 296
Target Start/End: Complemental strand, 10545734 - 10545548
Alignment:
Q  110 gcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgtttcttctcaagaacaggttgctga 209  Q
    |||| ||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||| |||    
T  10545734 gcactaaacacttggaaattgatttccacatagtgagggaaaagctacattctggcatactcaagcttcttcatgtttcttcttaagagcaggttgttga 10545635  T
Q  210 tttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagcttg 296  Q
    ||||||||| |||||||||||||||||||| || || ||||||||||| |||||||||||||||||||| || ||||||||||||||    
T  10545634 tttcttcaccaaagctcttcatcctcaacctttcaaccttcttttatctaagctgggcttgttagatatctatcaacctccagcttg 10545548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 296
Target Start/End: Original strand, 12298693 - 12298910
Alignment:
Q  79 catatagcagctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttc 178  Q
    |||||||| ||||| || || ||||||||| |||||||||| ||||| ||||||||||| ||||| ||||||||  ||||  | ||||| |||||  | |    
T  12298693 catatagctgctaatccggtctttcatgaacgcaccaaacatttggaaattgattgccatatagtcagagaaaaggtacaagcaggcatcctcaaattgc 12298792  T
Q  179 ttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatat 278  Q
    | || ||||| |||||||| || || |||||||| || || |||||| | | |||| |||| || ||  |||||||||||||| |||| ||| || | ||    
T  12298793 tcccagtttcctctcaagatcaagtagctgatttttttactaaagctttgcttcctaaaccattcaacattcttttatccaagatgggattgataaaaat 12298892  T
Q  279 ttaccaacctccagcttg 296  Q
    ||||||||||||| ||||    
T  12298893 ttaccaacctccatcttg 12298910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 296
Target Start/End: Original strand, 8838342 - 8838544
Alignment:
Q  94 cctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgtttcttctc 193  Q
    ||||||||||||||| | ||||||||  | ||||||||||| ||||| ||||| ||||| |||||  | |||||  |||| |||||||| ||| |  |||    
T  8838342 cctgtttttcatgaaagaaccaaacatcttgagattgattgtcacattgtgagggaaaagctacaagcaggcatcttcaaacttcttccagttaccactc 8838441  T
Q  194 aagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagc 293  Q
    | || ||  ||||||||||||| ||||| ||| |  | |||||||||||||  ||  |  | |||||| ||||  |||||||||||||||| |||||| |    
T  8838442 atgatcaaattgctgatttctttacaaaggctttatagcctcaaccctttagcctcttgctttccaagttggggatgttagatatttaccaccctccaac 8838541  T
Q  294 ttg 296  Q
    |||    
T  8838542 ttg 8838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 44666488 - 44666358
Alignment:
Q  88 gctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgttt 187  Q
    ||||| ||| ||||||||||| | || || || ||||| |||||||||||  |||| ||||||||||| ||  |||||||  | || ||||| |||||||    
T  44666488 gctaatcctatttttcatgaacgtactaagcatttggaaattgattgccatctagtcagagaaaaacttcaagctggcattttgaaacttctgcctgttt 44666389  T
Q  188 cttctcaagaacaggttgctgatttcttcac 218  Q
    |||||||||| ||  |||||||||| |||||    
T  44666388 cttctcaagatcaacttgctgattttttcac 44666358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 19584698 - 19584625
Alignment:
Q  79 catatagcagctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaa 152  Q
    |||||||| ||||| || || ||||||||| |||||||||| ||||| ||||||||||| ||||| ||||||||    
T  19584698 catatagctgctaatccggtctttcatgaacgcaccaaacatttggaaattgattgccatatagtcagagaaaa 19584625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 5686855 - 5686772
Alignment:
Q  183 tgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctggg 266  Q
    |||| |||||||||| ||| | ||  ||||||||||||||||||||||||||||||| || ||||| || ||||| ||| ||||    
T  5686855 tgttacttctcaagatcagctggccaatttcttcacaaaagctcttcatcctcaacctttcaatctcctattatctaagttggg 5686772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 266
Target Start/End: Complemental strand, 5665473 - 5665331
Alignment:
Q  124 gagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaag 223  Q
    |||||||| | ||||||||| ||||| || || ||  | ||||| ||||| ||  ||| |||| |||||||||| ||  | ||  |||||||||||||||    
T  5665473 gagattgactaccacatagtcagagagaagcttcagccaggcattctcaaactctttcttgttacttctcaagatcaactggccaatttcttcacaaaag 5665374  T
Q  224 ctcttcatcctcaaccctttaatcttcttttatccaagctggg 266  Q
    |||||||||||||||| || ||||| || ||||| ||| ||||    
T  5665373 ctcttcatcctcaacctttcaatctcctattatctaagttggg 5665331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 10560392 - 10560346
Alignment:
Q  68 aaagcggtttacatatagcagctaaccctgtttttcatgaatgcacc 114  Q
    |||||| |||||||||||||||||||| ||| ||||||||| |||||    
T  10560392 aaagcgctttacatatagcagctaaccatgtatttcatgaacgcacc 10560346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 18962782 - 18962714
Alignment:
Q  37 atcaagcttcctgtactcttctgtgacaatcaaagcggtttacatatagcagctaaccctgtttttcat 105  Q
    |||||||||||||| || |  ||||||||||| || | |||||| ||||| ||||||||||| ||||||    
T  18962782 atcaagcttcctgtcctttattgtgacaatcagagtgctttacacatagctgctaaccctgtatttcat 18962714  T

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Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 186 - 296
Target Start/End: Complemental strand, 5918722 - 5918612
Alignment:
Q  186 ttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttaccaa 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5918722 ttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttaccaa 5918623  T
Q  286 cctccagcttg 296  Q
    |||||||||||    
T  5918622 cctccagcttg 5918612  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 14817107 - 14817233
Alignment:
Q  89 ctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgtttc 188  Q
    |||||||||||||||||||  |||| ||||||||||| ||||| || ||| || | ||||||||  ||||   ||| || |||||| | |||||||||||    
T  14817107 ctaaccctgtttttcatgagcgcactaaacacttggaaattgactgtcacttaattagagaaaagttacaaagtgggattctcaagttgcttcctgtttc 14817206  T
Q  189 ttctcaagaacaggttgctgatttctt 215  Q
    ||||||||| || || |||||||||||    
T  14817207 ttctcaagaccaagtagctgatttctt 14817233  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 192
Target Start/End: Original strand, 34069034 - 34069183
Alignment:
Q  43 cttcctgtactcttctgtgacaatcaaagcggtttacatatagcagctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatag 142  Q
    |||||||| || | ||||||||| || || |  ||||| || ||||||||||| || ||||||||| | ||||| ||| | |||||||| || ||| | |    
T  34069034 cttcctgtgctttactgtgacaaccagagtgccttacacattgcagctaacccagtctttcatgaaagaaccaagcaccttgagattgactgtcacttgg 34069133  T
Q  143 tgagagaaaaactacattctggcatactcaagcttcttcctgtttcttct 192  Q
    | ||||||||||||||  | || ||| | |||||||| ||||||||||||    
T  34069134 ttagagaaaaactacaagcaggaataatgaagcttctccctgtttcttct 34069183  T

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Target: scaffold0329 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 296
Target Start/End: Original strand, 13302 - 13519
Alignment:
Q  79 catatagcagctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttc 178  Q
    |||||||| ||||| || || ||||||||| |||||||||| ||||| ||||||||||| ||||| ||||||||  ||||  | ||||| |||||  | |    
T  13302 catatagctgctaatccggtctttcatgaacgcaccaaacatttggaaattgattgccatatagtcagagaaaaggtacaagcaggcatcctcaaattgc 13401  T
Q  179 ttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatat 278  Q
    | || ||||| |||||||| || || |||||||| || || |||||| | | |||| |||| || ||  |||||||||||||| |||| ||| || | ||    
T  13402 tcccagtttcatctcaagatcaagtagctgatttttttactaaagctttgcttcctaaaccattcaacattcttttatccaagatgggattgataaacat 13501  T
Q  279 ttaccaacctccagcttg 296  Q
    ||||||||||||| ||||    
T  13502 ttaccaacctccatcttg 13519  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 296
Target Start/End: Original strand, 22645667 - 22645872
Alignment:
Q  91 aaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgtttctt 190  Q
    |||||||| || |||||  | |||||||| ||||||||||| || || || || ||||||||| | ||  ||||  | || || ||||| || |||||||    
T  22645667 aaccctgtcttccatgagagaaccaaacatttggagattgactgtcatattgttagagaaaaattgcaagctggtgttctgaaacttctcccagtttctt 22645766  T
Q  191 ctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttaccaacctcc 290  Q
    ||||||| ||  ||||||||||||||||||||||||||| |||  || | |||  ||| |||||||||||| |||||||| |||| ||||| |||| |||    
T  22645767 ctcaagatcaaattgctgatttcttcacaaaagctcttcttcccaaaacattttctctgcttttatccaagttgggcttgatagacatttatcaacgtcc 22645866  T
Q  291 agcttg 296  Q
    | ||||    
T  22645867 aacttg 22645872  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 296
Target Start/End: Original strand, 10869191 - 10869398
Alignment:
Q  89 ctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgtttc 188  Q
    |||||||||||||||||||  |||| ||||||||||| ||||| || ||| || | ||||||||  ||||   ||| || |||||| | |||||||||||    
T  10869191 ctaaccctgtttttcatgagcgcactaaacacttggaaattgactgtcacttaatcagagaaaagttacaaagtgggattctcaagttgcttcctgtttc 10869290  T
Q  189 ttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttaccaacct 288  Q
    ||||||||| || || |||||||| || || || ||| | | |||| |  |||||||| ||||| |||||||| |||| ||| || | ||||| ||| ||    
T  10869291 ttctcaagatcaagtagctgatttttttaccaaggctttgcttcctaagacctttaatattcttctatccaagttgggtttgataaacatttatcaatct 10869390  T
Q  289 ccagcttg 296  Q
    ||| ||||    
T  10869391 ccaccttg 10869398  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 296
Target Start/End: Original strand, 10655046 - 10655253
Alignment:
Q  89 ctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgtttc 188  Q
    |||||||||| ||||||||  |||| ||||||||||| ||||| || ||| || | ||||||||  ||||   ||| || |||||| | |||||||||||    
T  10655046 ctaaccctgtctttcatgagcgcactaaacacttggaaattgactgtcacttaatcagagaaaagttacaaagtgggattctcaagttgcttcctgtttc 10655145  T
Q  189 ttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttaccaacct 288  Q
    ||||||||| || || |||||||| || || || ||| | | |||| |  |||||||| ||||| |||||||| |||| ||| || | ||||| ||| ||    
T  10655146 ttctcaagatcaagtagctgatttttttaccaaggctttgcttcctaagacctttaatattcttctatccaagttgggtttgataaacatttatcaatct 10655245  T
Q  289 ccagcttg 296  Q
    ||| ||||    
T  10655246 ccaccttg 10655253  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 19799254 - 19799193
Alignment:
Q  235 caaccctttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagcttg 296  Q
    ||||| ||||||||  | ||||||||| |||| ||||||||||| |||||||||||| ||||    
T  19799254 caaccttttaatctcttgttatccaagttggggttgttagatatataccaacctccaacttg 19799193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 296
Target Start/End: Original strand, 19996466 - 19996674
Alignment:
Q  88 gctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaactacattctggcatactcaagcttcttcctgttt 187  Q
    ||||||||||| ||||||||| ||||||||||| | || || || ||||||||||| || || |||||| |  ||| | |  |||| ||||||||| |||    
T  19996466 gctaaccctgtctttcatgaacgcaccaaacaccttgaaatagactgccacatagtcagggagaaactatagactgtcttgttcaaacttcttcctattt 19996565  T
Q  188 cttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttaccaacc 287  Q
    ||||| |||| || || || ||||| || |||||| |  | | ||||||||| || ||| | ||| |||||||| ||||  |||||||||| ||||| ||    
T  19996566 cttctaaagatcaagtagcagatttttttacaaaatcattgcttcctcaaccattcaatttacttctatccaagttggggatgttagatatataccaccc 19996665  T
Q  288 tccagcttg 296  Q
    |||| ||||    
T  19996666 tccaacttg 19996674  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 289
Target Start/End: Complemental strand, 15885293 - 15885179
Alignment:
Q  175 cttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttag 274  Q
    ||||| |||||||||||| | || ||  |||||||||||||||| ||  |  | | |||||||||||| ||| |||||||||||||| | || |||||||    
T  15885293 cttctgcctgtttcttcttaggaccaacttgctgatttcttcactaagtcattgcttcctcaacccttcaatattcttttatccaagttagggttgttag 15885194  T
Q  275 atatttaccaacctc 289  Q
    || | ||||||||||    
T  15885193 atttgtaccaacctc 15885179  T

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Target: scaffold0655 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 86 - 21
Alignment:
Q  57 ctgtgacaatcaaagcggtttacatatagcagctaaccctgtttttcatgaatgcaccaaacactt 122  Q
    ||||||||||||||||| | | |||||||||||||||||||| || |||||| |||| ||||||||    
T  86 ctgtgacaatcaaagcgctcttcatatagcagctaaccctgtgttccatgaacgcacaaaacactt 21  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 38845301 - 38845207
Alignment:
Q  58 tgtgacaatcaaagcggtttacatatagcagctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaa 152  Q
    ||||| |||||||| | |||||||||| ||||||| || || ||||||||| | ||||| || || ||||||||||| ||||| || ||||||||    
T  38845301 tgtgataatcaaagtgctttacatatatcagctaatccagtctttcatgaaagaaccaagcatttagagattgattgtcacattgtcagagaaaa 38845207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 284
Target Start/End: Original strand, 8854506 - 8854733
Alignment:
Q  57 ctgtgacaatcaaagcggtttacatatagcagctaaccctgtttttcatgaatgcaccaaacacttggagattgattgccacatagtgagagaaaaacta 156  Q
    |||||| || ||||| | |||||| || ||||| ||||  ||||| |||||| | ||||| ||| | |||||||||||  || | || |||||||| |||    
T  8854506 ctgtgataaccaaagtgctttacacattgcagccaacctagttttccatgaaagaaccaagcaccttgagattgattgttacttggttagagaaaagcta 8854605  T
Q  157 cattctggcatactcaagcttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttat 256  Q
    ||  | | |||  | |||||||||||||| |||||    || ||| |||| || ||||| || ||| |||||| |||||||||||| ||  |||||||||    
T  8854606 caagcagacatcatgaagcttcttcctgtctcttcctctgaccagcttgcagacttctttactaaacctcttcttcctcaacccttcaacattcttttat 8854705  T
Q  257 ccaagctgggcttgttagatatttacca 284  Q
     |||||| |   ||||||||||||||||    
T  8854706 tcaagctcgaaatgttagatatttacca 8854733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 28154425 - 28154382
Alignment:
Q  94 cctgtttttcatgaatgcaccaaacacttggagattgattgcca 137  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||    
T  28154425 cctgtgtttcatgaacgcaccaaacacttagagattgattgcca 28154382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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