View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15888_low_16 (Length: 258)
Name: NF15888_low_16
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15888_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 14119432 - 14119661
Alignment:
| Q |
20 |
ttacaattgctctgttgagtgaatcttcatcagttcctagcccgacaatagaatcccttataacctgttgtgcatagaagtggaccaaaatgaaattgca |
119 |
Q |
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| T |
14119432 |
ttacaatagctctgttgagtgaatcttcatcagttcctagcccgacaatagaatcccttataacctgttgggcatagaagtggaccaaaatgaaattgca |
14119531 |
T |
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| Q |
120 |
atcactttctgaatgagtaatcttgatatagcttcaaagaaattagagtaaatggatactttgatattttaatgatgaaatgtcataatgttggtactcc |
219 |
Q |
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| T |
14119532 |
atcactttctgaatgagtaatcttgatatagcttcaaagaaattagagtaaatggatactttgatattttaatgatgaaatgtcataatgttggtactcc |
14119631 |
T |
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| Q |
220 |
tat-aaaatattcgtcaaaatagtcctatg |
248 |
Q |
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| T |
14119632 |
tataaaaatattcgtcaaaatagtcctatg |
14119661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 14132514 - 14132739
Alignment:
| Q |
20 |
ttacaattgctctgttgagtgaatcttcatcagttcctagcccgacaatagaatcccttataacctgtt-gtgcatagaagtggaccaaaatgaaattgc |
118 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||| |
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| T |
14132514 |
ttacaatagctctgtttagtgaatcttcatcagttcctagcccgacaatagaatcccttataacctgtttgtgcatagaagtgaaccgaaatgagattgc |
14132613 |
T |
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| Q |
119 |
aatcactttctgaatgagtaatcttgatatagcttcaaagaaattagagtaaatggatactttgatattttaatgatgaaatgtcataatgttggtactc |
218 |
Q |
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| T |
14132614 |
aatcattttctgaatgagtaatcttgatatagcttcaaagaaattacagtaaatggatactttgatattttaaagatgaaatgcaaccatgttggtactc |
14132713 |
T |
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| Q |
219 |
ctat-aaaatattcgtcaaaatagtc |
243 |
Q |
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| T |
14132714 |
ctataaaaatattcgtcaaaatagtc |
14132739 |
T |
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