View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15888_low_18 (Length: 247)
Name: NF15888_low_18
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15888_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 54 - 232
Target Start/End: Complemental strand, 48605689 - 48605511
Alignment:
| Q |
54 |
cccaattttgcatatccagatattgaaagttccgatccttgctctcctatgaagatttgtttcaacaattttctgcttgctctttattttcttaataatt |
153 |
Q |
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| T |
48605689 |
cccaattttgcatatccagatattgaaagttccgatccttgctctcctatgaagatttgtttcaacaattttctgcttgctctttattttcttaataatt |
48605590 |
T |
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| Q |
154 |
tgttagtttttcaataaacctatcagtaaggataaggatcggaacctttgtaagtgcatgaccattaaacttgcctttg |
232 |
Q |
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| T |
48605589 |
tgttagtttttcaataaacctatcagtaaggataaggatcggaacctttgtaagtgcatgaccattaaacttgcctttg |
48605511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 5963711 - 5963597
Alignment:
| Q |
56 |
caattttgcatatccagatattgaaag-ttccgatccttgctctcctatgaagatttgtttcaacaattttctgcttgctctttattttctt---aataa |
151 |
Q |
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| T |
5963711 |
caattctgcatatccagatattgaaagtttttgatccttgctcagctatcgatatttctttcaacaattatccgttctctctttattttcttgtgaataa |
5963612 |
T |
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| Q |
152 |
tttgttagtttttca |
166 |
Q |
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| T |
5963611 |
tttgttagtttttca |
5963597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 176
Target Start/End: Complemental strand, 26878335 - 26878306
Alignment:
| Q |
147 |
aataatttgttagtttttcaataaacctat |
176 |
Q |
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| T |
26878335 |
aataatttgttagtttttcaataaacctat |
26878306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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