View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15888_low_4 (Length: 450)
Name: NF15888_low_4
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15888_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Original strand, 7165417 - 7165844
Alignment:
| Q |
16 |
caaaaagttccaatttttcacatacccaaaatacccttcatgctcttgctactgttctcgcaaaatctggtaaattggttgagctcaaattgcttattga |
115 |
Q |
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| T |
7165417 |
caaaaagttccaatttttcacatacccaaaatacccttcatgctcttgctactgttctcgcaaaatctggtaaattggttgagctcaaatcgcttattga |
7165516 |
T |
|
| Q |
116 |
tgatatcgaaagtaaacggtttggtaatgttaagattagttttatgaatttaatgcagtggtatgctgcagctagggatattgattctgttgttagggtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7165517 |
tgatatcgaaagtaaacggtttggtaatgttaagattagttttatgaatttaatgcagtggtatgctgcagctaaggatattgattctgttgttagggtt |
7165616 |
T |
|
| Q |
216 |
tgggatcagtatagagttgaaagtagaatagtgtgtactgaatcttataacattgttatggctctttatgtagaaatgggtaaggattctgaggctgttg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7165617 |
tgggatcagtatagagttgaaagtagaatagtgtgtactgaatcttataacattgttatgactctttatgtagaaatgggtaaggattctgaggctgttg |
7165716 |
T |
|
| Q |
316 |
gaattttttgtaagatggttgatgacgggtcggttccgaattgtagaagttatagtataataattgagcaccttgtgaaatgtaggaagtttttggaagc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7165717 |
gaattttttgtaagatggttgatgacgggtcggttccgaattgtagaagttatagtataataattgagcaccttgtgaaatgtaggaagtttttggaagc |
7165816 |
T |
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| Q |
416 |
tattgaggtttttcatttgttgcctttg |
443 |
Q |
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||||||||||||| |||||||||||||| |
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| T |
7165817 |
tattgaggtttttaatttgttgcctttg |
7165844 |
T |
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