View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15888_low_5 (Length: 447)
Name: NF15888_low_5
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15888_low_5 |
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| [»] scaffold0049 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 224 - 441
Target Start/End: Original strand, 33185869 - 33186079
Alignment:
| Q |
224 |
atttgcaagttgggtttgtgggaaaaccaatagtagtgtgtttgcactatttatggtagccatggcccatgtgggttggctcatccctttcaagttatgc |
323 |
Q |
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| T |
33185869 |
atttgcaagttgggtttgtgggaaaaccagtagtagtgtggttgcactatatatggtagccat-------gtgggttggctcatccctttcaagttatgc |
33185961 |
T |
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| Q |
324 |
accacttccccaaggtgctctgttgactctcatctatatctccattaagctgcaatctgaccaaatataaagaacatgcctctgctagcatttcttactt |
423 |
Q |
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| T |
33185962 |
accaattccccaaggtgctctgttaactctcatctacatgtccattaagctgcaatctgaccaaatataaagaccatgcttctgccagcatttcttactt |
33186061 |
T |
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| Q |
424 |
ctgaatttggatgatgtc |
441 |
Q |
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| T |
33186062 |
ctgaatttgtatgatgtc |
33186079 |
T |
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Target: scaffold0049 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 9493 - 9419
Alignment:
| Q |
133 |
tgtaggtttattgatcaatttaaggatattaaatcagctactatttcaaagtcttcacgattatttgttggtgtt |
207 |
Q |
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| T |
9493 |
tgtaggcttattaatcaatttaaggatattaaatcaactactatttcaaagtcttcatgattattagttgttgtt |
9419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 9575 - 9505
Alignment:
| Q |
42 |
gacggttgatagttgctgctacaaggtacggtgggaagtgggtaaatcattgttgtgtggaggtgcattat |
112 |
Q |
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| T |
9575 |
gacggtggatagttgctgctacaaggtacagcagggagtgagtataaaattgttgtgtggaggtgcattat |
9505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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