View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15888_low_6 (Length: 441)

Name: NF15888_low_6
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15888_low_6
NF15888_low_6
[»] chr8 (4 HSPs)
chr8 (125-423)||(41375621-41375919)
chr8 (20-110)||(41375498-41375588)
chr8 (37-96)||(10621383-10621442)
chr8 (40-110)||(30659984-30660054)
[»] chr7 (3 HSPs)
chr7 (37-110)||(44662457-44662530)
chr7 (40-110)||(46195949-46196019)
chr7 (37-109)||(6548707-6548778)
[»] chr2 (3 HSPs)
chr2 (37-110)||(24202178-24202251)
chr2 (69-109)||(38790090-38790130)
chr2 (46-83)||(40473543-40473580)
[»] chr6 (1 HSPs)
chr6 (46-98)||(7234002-7234054)
[»] chr3 (3 HSPs)
chr3 (37-108)||(9489505-9489576)
chr3 (46-96)||(27394544-27394594)
chr3 (46-98)||(40160772-40160824)
[»] chr1 (1 HSPs)
chr1 (37-93)||(32660858-32660914)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 125 - 423
Target Start/End: Original strand, 41375621 - 41375919
Alignment:
Q  125 ttaacatgagccgtcgaatttaattaacagtttagatttagnnnnnnnnnnnnnnnaatttaaacccctaacacaagaaatcagatactagtctttccct 224  Q
    |||||||||||||||| ||||||||||||||||||||||||               |||||||||||||||||||||||||||||  |||||||| ||||    
T  41375621 ttaacatgagccgtcggatttaattaacagtttagatttagtttttttcattttttaatttaaacccctaacacaagaaatcagaacctagtcttcccct 41375720  T
Q  225 tcctttcactcatcttcatcgagttctcgtcctcgtctgtcaaatagatattgcagttttcatccattttcgtcctggttgggaatctgttcatgccaaa 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41375721 tcctttcactcatcttcatcgagttctcgtcctcgtctgtcaaatagatattgcagttttaatccattttcgtcctggttgggaatctgttcatgccaaa 41375820  T
Q  325 gaagaagaacatatcatgaaaacatattggatttttaagctttttgacatgaagaggtggcaaacatttgtaagagaaacggattgatttggatcttac 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41375821 gaagaagaacatatcatgaaaacatattggatttttaagctttttgacatgaagaggtggcaaacatttgtaagagaaacggattgatttggatcttac 41375919  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 41375498 - 41375588
Alignment:
Q  20 tgtgagcttagttcatttgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 110  Q
    ||||||||||| ||| ||| |||||||||| ||||| | |||||||||   |||||||| |||||||||||||||||| | ||||||||||    
T  41375498 tgtgagcttagctcacttgtattatgtatgtaggggttggggtttgaactccggacacctcactatttcacctttaaagtgaatttctcca 41375588  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 10621442 - 10621383
Alignment:
Q  37 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaa 96  Q
    |||||||||||||||||||   ||||||||| | ||||||||||| | ||||||||||||    
T  10621442 tgcattatgtatgcaggggtcagggtttgaaccccggacaccccattttttcacctttaa 10621383  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 30659984 - 30660054
Alignment:
Q  40 attatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 110  Q
    ||||||||||||||||   |||||  || | ||||||||||||||||||||||||||  ||||||| ||||    
T  30659984 attatgtatgcaggggtcggggttcaaaccccggacaccccactatttcacctttaaggtaaatttttcca 30660054  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 44662530 - 44662457
Alignment:
Q  37 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 110  Q
    ||||||||||||||||||||  ||||| ||| | ||||||||||||||||||||||||||  | ||||||||||    
T  44662530 tgcattatgtatgcaggggccggggttcgaaccccggacaccccactatttcacctttaaggtgaatttctcca 44662457  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 46195949 - 46196019
Alignment:
Q  40 attatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 110  Q
    ||||||||||||||||   ||||||||| | ||||||||||||||||||||||||||  | ||||||||||    
T  46195949 attatgtatgcaggggtcggggtttgaaccccggacaccccactatttcacctttaaggtgaatttctcca 46196019  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 6548778 - 6548707
Alignment:
Q  37 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcc 109  Q
    |||||||||||||||||| |  ||||| |||   ||||||||||||||||||||||||||  | |||||||||    
T  6548778 tgcattatgtatgcagggccg-gggttcgaactccggacaccccactatttcacctttaaggtgaatttctcc 6548707  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 24202178 - 24202251
Alignment:
Q  37 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 110  Q
    ||||||||||||||||||||  ||||| ||| | ||||||||||||||||||||||||||  | ||||||||||    
T  24202178 tgcattatgtatgcaggggccggggttcgaaccccggacaccccactatttcacctttaaggtgaatttctcca 24202251  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 38790130 - 38790090
Alignment:
Q  69 ctcggacaccccactatttcacctttaaaataaatttctcc 109  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  38790130 ctcggacaccccactatttcacctttaagatgaatttctcc 38790090  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 40473580 - 40473543
Alignment:
Q  46 tatgcaggggcttgggtttgaatctcggacaccccact 83  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  40473580 tatgcaggggctggggtttgaacctcggacaccccact 40473543  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 7234002 - 7234054
Alignment:
Q  46 tatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaa 98  Q
    |||||||||||| ||||||||| |||||||||||||||  |||||||| ||||    
T  7234002 tatgcaggggctggggtttgaacctcggacaccccacttattcaccttgaaaa 7234054  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 9489505 - 9489576
Alignment:
Q  37 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctc 108  Q
    ||||||||||||||||||||  ||||| ||| |  ||| |||| |||||||||||||||| || ||||||||    
T  9489505 tgcattatgtatgcaggggccggggttcgaaccctggataccctactatttcacctttaagatgaatttctc 9489576  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 27394544 - 27394594
Alignment:
Q  46 tatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaa 96  Q
    |||||||||||| ||||||||| | |||||||||||||  |||||||||||    
T  27394544 tatgcaggggctggggtttgaaccccggacaccccacttattcacctttaa 27394594  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 40160772 - 40160824
Alignment:
Q  46 tatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaa 98  Q
    ||||| |||||| ||||||||| | |||||||||||||  |||||||||||||    
T  40160772 tatgccggggctggggtttgaaccccggacaccccacttattcacctttaaaa 40160824  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 32660858 - 32660914
Alignment:
Q  37 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctt 93  Q
    |||||||| |||||||||||| |||||  || | ||||||||||||| |||||||||    
T  32660858 tgcattatatatgcaggggctggggttcaaaccccggacaccccactttttcacctt 32660914  T

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