View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15888_low_8 (Length: 413)
Name: NF15888_low_8
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15888_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 31439071 - 31438685
Alignment:
| Q |
9 |
agcacagacattacataacaagtgagaaatttggtatgggacagtccccacccaatttttagagccaactactttggacatttgaactaactcacgagca |
108 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31439071 |
agcactgacattacataacaagtgagaaatttggtatgggacagtccccacccaatttttagagccaactactttggacatttgaactaactcatgagca |
31438972 |
T |
|
| Q |
109 |
acacagttttgatttctactaatagcagtaaccttaatatcctcaaacaaatctaaaatagaacaacaatcttggataattggatcaattgcagccatta |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31438971 |
acaaagttttgatttctactaatagcagtaaccttaatatcctcaaacaaatctaaaatagaacaacaatcttggataattggatcaattgcagccatta |
31438872 |
T |
|
| Q |
209 |
tagccttgccattgatacaatccacaacagtagcagcgtcagactccaccaccaccttatttaatcgcaaatcttttgcaactgagagacaccgcctcaa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31438871 |
tagccttgccattgatacaatccacaacagtagcagcatcagactccaccaccaccttatttaatcgcaaatcttttgcaactgagagacaccacctcaa |
31438772 |
T |
|
| Q |
309 |
accaagtgcctctgccaacataggactcaactccacttcttctcttttacacacagtaaaactgacagccccaatatgatctctaat |
395 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31438771 |
accaagtgcctctgtcaacataggactcaactccacttcttctcttttacacgcagtaaaactgacagccccaatatgatctctaat |
31438685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 31197234 - 31196889
Alignment:
| Q |
17 |
cattacataacaagtgagaaatttggtatgggacagtccccacccaatttttagagccaactactttggacatttgaactaactcacgagcaacacagtt |
116 |
Q |
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||||||| | ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| || |||| |
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| T |
31197234 |
cattacagagcaagtgagaaatttggtgtgggaaagtgaccacccaatttttagagccaactactgtggacatttgaactaactctcgagcatcagagtt |
31197135 |
T |
|
| Q |
117 |
ttgatttctactaatagcagtaaccttaatatcctcaaacaaatctaaaatagaacaacaatcttggataattggatcaattgcagccattatagccttg |
216 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31197134 |
ttgatttctactaatagcagtaacaataatatcctcaaacaaatttaaaatagagcaa---tcttggataattggatcaattgcagccattatagccttg |
31197038 |
T |
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| Q |
217 |
ccattgatacaatccacaacagtagcagcgtcagactccaccaccaccttatttaatcgcaaatcttttgcaactgagagacaccgcctcaaaccaagtg |
316 |
Q |
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||||||||||||||||||||||||||| | || ||||||||||||||||| ||||| |||| |||||||||||| ||||||||| ||||||||||||| |
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| T |
31197037 |
ccattgatacaatccacaacagtagcatcatcggactccaccaccaccttgtttaaaggcaagtcttttgcaactaagagacaccatctcaaaccaagtg |
31196938 |
T |
|
| Q |
317 |
cctctgccaacataggactcaactccacttcttctcttttacacacagt |
365 |
Q |
| |
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||| |||||||||| ||||||||||||||||||||||||| ||| |||| |
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|
| T |
31196937 |
cctttgccaacataagactcaactccacttcttctcttttgcacgcagt |
31196889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 176 - 377
Target Start/End: Original strand, 29250045 - 29250246
Alignment:
| Q |
176 |
aatcttggataattggatcaattgcagccattatagccttgccattgatacaatccacaacagtagcagcgtcagactccaccaccaccttatttaatcg |
275 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| || | |||||||||||||||| ||||| | |
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| T |
29250045 |
aatcttggataattggatcaactgcagccattatagccttgacattgatacaatccacaacagcagctgcattgaactccaccaccaccttgtttaaaca |
29250144 |
T |
|
| Q |
276 |
caaatcttttgcaactgagagacaccgcctcaaaccaagtgcctctgccaacataggactcaactccacttcttctcttttacacacagtaaaactgaca |
375 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||| ||||||||| |
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| T |
29250145 |
caaatattttgcaactgagagacaccatctcaaaccaagtgcctccgccaacataggactcaaatccacttcttctcttttgcaagcagccaaactgaca |
29250244 |
T |
|
| Q |
376 |
gc |
377 |
Q |
| |
|
|| |
|
|
| T |
29250245 |
gc |
29250246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 29249962 - 29250041
Alignment:
| Q |
32 |
gagaaatttggtatgggacagtccccacccaatttttagagccaactactttggacatttgaactaactcacgagcaaca |
111 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
29249962 |
gagaaatttggtgtgggacattccccacccaatttttagagccaactatgttggacatttgaactaactcatgagcaaca |
29250041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 198
Target Start/End: Complemental strand, 28767935 - 28767765
Alignment:
| Q |
31 |
tgagaaatttggtatgggacagtccccacccaatttttagagccaactactttggacatttgaactaactcacgagcaacacagttttgatttctactaa |
130 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||| | |||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
28767935 |
tgagaaatttggtgtggaactttccccacccaattttttgtgccaactattttgggcatttgaactaactcatcagcaacaaagttttgatttctactaa |
28767836 |
T |
|
| Q |
131 |
tagcagtaaccttaatatcctcaaacaaatctaaaatagaaca---acaatcttggataattggatcaatt |
198 |
Q |
| |
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||| ||||| ||| ||||| ||||||||| |||||||||||| |||||||||||||||||||| |||| |
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|
| T |
28767835 |
tagtagtaatcttcatatcttcaaacaaaattaaaatagaacaacaacaatcttggataattggattaatt |
28767765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 28768310 - 28768230
Alignment:
| Q |
75 |
aactactttggacatttgaactaactcacgagcaacacagttttgatttctactaatagcagtaaccttaatatcctcaaa |
155 |
Q |
| |
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||||| ||| ||||||||||||||| || |||||||| |||||||||||||||||||| ||||| ||| ||||||||||| |
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|
| T |
28768310 |
aactattttagacatttgaactaacccatgagcaacaaagttttgatttctactaatatgagtaatcttcatatcctcaaa |
28768230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 28768202 - 28768137
Alignment:
| Q |
170 |
aacaacaatcttggataattggatcaattgcagccattatagccttgccattgatacaatccacaa |
235 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||| ||| ||||||||||||||| |||||| |
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|
| T |
28768202 |
aacaacaatcttggataattggataaattacatccatcgtagatttgccattgatacaaaccacaa |
28768137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 28768483 - 28768423
Alignment:
| Q |
31 |
tgagaaatttggtatgggacagtccccacccaatttttagagccaactactttggacattt |
91 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| | |||| || ||||||||||| |
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|
| T |
28768483 |
tgagaaatttggtgtgggactttccccacccaattttttcaaccaattattttggacattt |
28768423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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