View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15888_low_9 (Length: 402)
Name: NF15888_low_9
Description: NF15888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15888_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 383
Target Start/End: Original strand, 48172050 - 48172419
Alignment:
| Q |
14 |
agattatactgcagaagaggccatcacatgtgtatcctttatgtttgaacaaaacaacatattgtgggaacagtttgaataatttgttgtgctaaataaa |
113 |
Q |
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| T |
48172050 |
agattgtactgcagaagaggccatcacatgtgtatcctttatttttgaactaaacaacatattgtgggaacagtttgaataatttgttgtgctaaataaa |
48172149 |
T |
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| Q |
114 |
tatttctactactaccatactatttcttattctgtcctaatgttcttaactacattttgcaggcgttgcccaaagtaaagcaaatacttttgtcaagatg |
213 |
Q |
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| T |
48172150 |
tatttctactactaccatactatttcttattctgtcctaatgttcttaactacattttgcaggcgttgcccaaagtaaagcaaatactattgtcaagatg |
48172249 |
T |
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| Q |
214 |
attgaatgggaaaagttgggcttgtagtctgctactttattaaactgccaaattgtgtactcagagagcgtgcagtgtaacgttgattgtttttgcttnn |
313 |
Q |
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| T |
48172250 |
attgaatgggaaaagttgggcttgtagtctgctactttattaaactgccaaattgtgtactcagagagcgtgcagtgtaacgttgattgtttttactaaa |
48172349 |
T |
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| Q |
314 |
nnnnncacattgattcttgagctagtggctagttttatgcataacaaagcatcattttttacgaccattc |
383 |
Q |
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| T |
48172350 |
aaaaacacattgattcttgagctggtggctagttttatgcataacaacacatcattttttacgaccattc |
48172419 |
T |
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