View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15889_low_3 (Length: 227)

Name: NF15889_low_3
Description: NF15889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15889_low_3
NF15889_low_3
[»] chr1 (9 HSPs)
chr1 (6-227)||(13162332-13162553)
chr1 (6-227)||(13095210-13095431)
chr1 (6-224)||(13130639-13130857)
chr1 (15-227)||(30367268-30367477)
chr1 (25-218)||(13069360-13069550)
chr1 (25-218)||(13205289-13205479)
chr1 (14-67)||(14708248-14708301)
chr1 (25-67)||(13008018-13008060)
chr1 (10-55)||(13067510-13067555)
[»] chr6 (1 HSPs)
chr6 (111-227)||(31376414-31376527)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 13162332 - 13162553
Alignment:
Q  6 attaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtccacctgcttctgaatggaatgttgg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13162332 attaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtccaccttcttctgaatggaatgttgg 13162431  T
Q  106 gacatgttcttgaagcttttccttccaagaactaaatgaaacattgtcttctcctgtttccatacatcgttggaatcagaattgaaaatactacctccaa 205  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13162432 aacatgttcttgaagcttttccttccaagaactaaatgaaacattgtcttctcctgtttccatacatcgttggaatcagaattgaaaatactacctccaa 13162531  T
Q  206 gaacttcaaaaatatcatggaa 227  Q
    ||||||||||||||||||||||    
T  13162532 gaacttcaaaaatatcatggaa 13162553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 13095210 - 13095431
Alignment:
Q  6 attaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtccacctgcttctgaatggaatgttgg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  ||||||| |||||||||||| |||| |    
T  13095210 attaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatcaggtagttctccaccttcttctgaatggattgttcg 13095309  T
Q  106 gacatgttcttgaagcttttccttccaagaactaaatgaaacattgtcttctcctgtttccatacatcgttggaatcagaattgaaaatactacctccaa 205  Q
      ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13095310 accatgttcttgaagcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatacatcgtcggaatcagaattgaaaatactacctccaa 13095409  T
Q  206 gaacttcaaaaatatcatggaa 227  Q
    ||||||||||||||||||||||    
T  13095410 gaacttcaaaaatatcatggaa 13095431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 13130639 - 13130857
Alignment:
Q  6 attaaaggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtccacctgcttctgaatggaatgttgg 105  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||  ||||||| |||||||||||| |||| |    
T  13130639 attaaaggcatcttgcaaatccacatgagctcctgcttcagatacatcattaagaaatggtatcaggtagttctccaccttcttctgaatggattgttcg 13130738  T
Q  106 gacatgttcttgaagcttttccttccaagaactaaatgaaacattgtcttctcctgtttccatacatcgttggaatcagaattgaaaatactacctccaa 205  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  13130739 aacatgttcttgaagcttttccttccaagaactaaatgaaacattgtcttctcttgtttccatacatcgtcggaatcagaattgaaaatactacctccaa 13130838  T
Q  206 gaacttcaaaaatatcatg 224  Q
    ||||||||||||| |||||    
T  13130839 gaacttcaaaaatgtcatg 13130857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 30367477 - 30367268
Alignment:
Q  15 atcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtccacctgcttctgaatggaatgttgggacatgttc 114  Q
    ||||||||| ||||||| ||  |||||||||||||||||||||| |||||||| |||  | |  |||| ||  || | | | |  |||||| ||| ||||    
T  30367477 atcttgcaagtccacctcagaacctgcttcagatacatcattaataaatggtagtaggaatttctccagcttttttttactagtttgttggaacaagttc 30367378  T
Q  115 ttgaagcttttccttccaagaactaaatgaaacattgtcttctcctgtttccatacatcgttggaatcagaattgaaaatactacctccaagaacttcaa 214  Q
    |||||||||||||||   |||| | |||||||||||| | ||| || |||||||||   || |||||||||||||| ||||| |||||||| || |||||    
T  30367377 ttgaagcttttccttttgagaattgaatgaaacattgccctcttctctttccatac---gtgggaatcagaattgacaataccacctccaaaaaattcaa 30367281  T
Q  215 aaatatcatggaa 227  Q
    |||| || |||||    
T  30367280 aaatttcttggaa 30367268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 13069550 - 13069360
Alignment:
Q  25 tccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtccacctgcttctgaatggaatgttgggacatgttcttgaagcttt 124  Q
    ||||||||||| |||  |||||||||||||||||||||||||| ||| ||||  |||| ||  ||||  || |  |||||| | | |||||||||| |||    
T  13069550 tccacctgagcacctatttcagatacatcattaagaaatggtagtaggtagttctccagctttttcttcatagtttgttggaagaagttcttgaaggttt 13069451  T
Q  125 tccttccaagaactaaatgaaacattgtcttctcctgtttccatacatcgttggaatcagaattgaaaatactacctccaagaacttcaaaaat 218  Q
    |||||  ||||| | |||||||||||||| |||  ||||||||||   ||| ||||| |||||| ||||||| | |||||| ||  ||||||||    
T  13069450 tccttttaagaaatgaatgaaacattgtcctctgttgtttccata---cgtgggaattagaatttaaaataccatctccaaaaaaatcaaaaat 13069360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 13205289 - 13205479
Alignment:
Q  25 tccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtccacctgcttctgaatggaatgttgggacatgttcttgaagcttt 124  Q
    |||| |||||| |||  |||||||||||||| ||||||||||| ||| ||||  |||| ||  ||||  || |  |||||| | | |||||||||| |||    
T  13205289 tccagctgagcacctatttcagatacatcatcaagaaatggtagtaggtagttctccagctttttcttcatagtttgttggaagaagttcttgaaggttt 13205388  T
Q  125 tccttccaagaactaaatgaaacattgtcttctcctgtttccatacatcgttggaatcagaattgaaaatactacctccaagaacttcaaaaat 218  Q
    |||||   |||| | |||||||||||||| |||  ||||||||||   ||||||||| |||||| ||||||| | |||||| ||  ||||||||    
T  13205389 tccttttgagaaatgaatgaaacattgtcctctgttgtttccata---cgttggaattagaatttaaaataccatctccaaaaaaatcaaaaat 13205479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 14708248 - 14708301
Alignment:
Q  14 catcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggta 67  Q
    ||||||| |||||||||||||| ||| |||| ||||||| ||||||||||||||    
T  14708248 catcttgtaaatccacctgagcacctacttctgatacatgattaagaaatggta 14708301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 13008018 - 13008060
Alignment:
Q  25 tccacctgagctcctgcttcagatacatcattaagaaatggta 67  Q
    ||||||||||| |||  ||||||||||||||||||||||||||    
T  13008018 tccacctgagcacctatttcagatacatcattaagaaatggta 13008060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 13067555 - 13067510
Alignment:
Q  10 aaggcatcttgcaaatccacctgagctcctgcttcagatacatcat 55  Q
    |||||||||||||| ||||||||||  ||||||||||| |||||||    
T  13067555 aaggcatcttgcaagtccacctgagaacctgcttcagacacatcat 13067510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 31376414 - 31376527
Alignment:
Q  111 gttcttgaagcttttccttccaagaactaaatgaaacattgtcttctcctgtttccatacatcgttggaatcagaattgaaaatactacctccaagaact 210  Q
    |||||||||||||||||||   |||| | |||||||||||||| ||| || ||||||||   ||| |||||||||||||| ||||| |||||||| || |    
T  31376414 gttcttgaagcttttccttttgagaattgaatgaaacattgtcctcttctctttccata---cgtgggaatcagaattgacaataccacctccaaaaaat 31376510  T
Q  211 tcaaaaatatcatggaa 227  Q
    |||||||| || |||||    
T  31376511 tcaaaaatttcttggaa 31376527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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