View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1588_high_1 (Length: 340)
Name: NF1588_high_1
Description: NF1588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1588_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 4749161 - 4748851
Alignment:
| Q |
11 |
tcgaagaaaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaacttt |
110 |
Q |
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| T |
4749161 |
tcgaagcaaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaagacagaagtgatgacatcaaaagtgaacttt |
4749062 |
T |
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| Q |
111 |
ttggtctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaatt |
210 |
Q |
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| T |
4749061 |
ttggcctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaatt |
4748962 |
T |
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| Q |
211 |
cgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctga |
310 |
Q |
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| T |
4748961 |
cgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctga |
4748862 |
T |
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| Q |
311 |
agcagggtatc |
321 |
Q |
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| T |
4748861 |
agcagggtatc |
4748851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 4756992 - 4756713
Alignment:
| Q |
18 |
aaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaactttttggtct |
117 |
Q |
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|||||||||||||||| ||||||||| ||||||| | || ||||||||||| |||| ||| | | ||||||||| ||||||| |||||| | ||| |
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| T |
4756992 |
aaatcaatgtacaaattttcaaccaaaccaaggtccacgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctcatct |
4756893 |
T |
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| Q |
118 |
ctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaa---ttcgtg |
214 |
Q |
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|||| ||||||||| ||||||||| |||||||| | |||||||||| |||||| || |||| || ||||||| ||||||| | |||| ||||| |
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| T |
4756892 |
ctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagactaatataagttgacaatgcttcgtc |
4756793 |
T |
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| Q |
215 |
accatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctg |
294 |
Q |
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||||||||| ||||| ||| ||| || ||||||||| || || | | |||| ||||||||||||||| |||| |||| |
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| T |
4756792 |
accatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatcttttacctg |
4756713 |
T |
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