View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1588_high_3 (Length: 290)
Name: NF1588_high_3
Description: NF1588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1588_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 16822631 - 16822461
Alignment:
| Q |
19 |
gaacacatacaatacaaagtaaagttaccctacacatcatggaatcgagagggctaaagaacacatgcattatacataaatttgttcccaattaatttgt |
118 |
Q |
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| T |
16822631 |
gaacacatacaatacaaagtaaagttaccctacacatcatggaatcgagagggctaaagaacacatgcattatacataaatttgtccccaattaatttgt |
16822532 |
T |
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| Q |
119 |
aatcaaaataattggtgaatagcttaatttgtatacaacatttagttaggtatacaaatactacagctacc |
189 |
Q |
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| T |
16822531 |
aatcaaaataattggtgaatagcttaatttgtatacaacatttagttaggtatacaaatactacagctacc |
16822461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 187 - 290
Target Start/End: Complemental strand, 16822373 - 16822270
Alignment:
| Q |
187 |
accatgagattattgaaaaaagttgcataagccatcttaatttctttgcatgagtacatgattataattttgtcttccatattattctccctctaatttc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16822373 |
accatgagattattgaaaaaagttgcataagccatcttaatttctttgcatgagtacgtgattataattttgtcttccatattattctccctctaatttc |
16822274 |
T |
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| Q |
287 |
tttc |
290 |
Q |
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|||| |
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| T |
16822273 |
tttc |
16822270 |
T |
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