View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1588_high_4 (Length: 275)

Name: NF1588_high_4
Description: NF1588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1588_high_4
NF1588_high_4
[»] chr6 (16 HSPs)
chr6 (11-124)||(8445266-8445378)
chr6 (11-124)||(8454070-8454182)
chr6 (202-275)||(8445370-8445443)
chr6 (202-275)||(8454174-8454247)
chr6 (154-201)||(14105961-14106008)
chr6 (154-201)||(16922271-16922318)
chr6 (154-201)||(17557572-17557619)
chr6 (154-201)||(23582236-23582283)
chr6 (154-201)||(4587861-4587908)
chr6 (154-201)||(27784448-27784495)
chr6 (11-62)||(8439994-8440045)
chr6 (138-172)||(11837812-11837846)
chr6 (138-172)||(14103797-14103831)
chr6 (138-172)||(23580091-23580125)
chr6 (138-172)||(27782272-27782306)
chr6 (171-203)||(12782973-12783005)
[»] chr8 (30 HSPs)
chr8 (154-202)||(17946582-17946630)
chr8 (154-201)||(3703168-3703215)
chr8 (154-201)||(16097635-16097682)
chr8 (154-201)||(18957427-18957474)
chr8 (154-202)||(278754-278802)
chr8 (154-202)||(637050-637098)
chr8 (154-202)||(822853-822901)
chr8 (165-201)||(23345171-23345207)
chr8 (154-201)||(26965364-26965411)
chr8 (154-201)||(38059243-38059290)
chr8 (154-201)||(41182400-41182447)
chr8 (154-199)||(4621484-4621529)
chr8 (127-172)||(27911883-27911928)
chr8 (127-172)||(27958302-27958347)
chr8 (165-202)||(39859980-39860017)
chr8 (136-172)||(4622916-4622952)
chr8 (165-201)||(17852389-17852425)
chr8 (168-199)||(6096867-6096898)
chr8 (138-172)||(15883589-15883623)
chr8 (138-172)||(25583778-25583812)
chr8 (165-199)||(38576588-38576622)
chr8 (154-199)||(15881233-15881278)
chr8 (154-199)||(30475974-30476019)
chr8 (136-172)||(276588-276624)
chr8 (136-172)||(639225-639261)
chr8 (136-172)||(825031-825067)
chr8 (169-201)||(2081366-2081398)
chr8 (124-172)||(17853448-17853496)
chr8 (136-172)||(17948670-17948706)
chr8 (165-201)||(35019235-35019271)
[»] chr7 (26 HSPs)
chr7 (154-201)||(723484-723531)
chr7 (154-201)||(16273908-16273955)
chr7 (154-201)||(20122349-20122396)
chr7 (165-203)||(4657016-4657054)
chr7 (154-200)||(44456896-44456942)
chr7 (154-199)||(3412676-3412721)
chr7 (165-201)||(4861946-4861982)
chr7 (165-201)||(23592538-23592574)
chr7 (165-201)||(41338316-41338352)
chr7 (154-201)||(33244607-33244654)
chr7 (154-201)||(38179659-38179706)
chr7 (138-172)||(16277698-16277732)
chr7 (165-199)||(40013623-40013657)
chr7 (154-199)||(47906947-47906992)
chr7 (168-201)||(48684614-48684647)
chr7 (125-172)||(20119872-20119919)
chr7 (154-201)||(48950231-48950278)
chr7 (138-172)||(725658-725692)
chr7 (138-172)||(4859584-4859618)
chr7 (155-201)||(21817383-21817429)
chr7 (138-172)||(41858678-41858712)
chr7 (138-172)||(44459428-44459462)
chr7 (138-172)||(48952301-48952335)
chr7 (154-199)||(41856272-41856317)
chr7 (165-201)||(33982635-33982671)
chr7 (165-201)||(41287553-41287589)
[»] chr5 (18 HSPs)
chr5 (154-201)||(822818-822865)
chr5 (154-201)||(9593857-9593904)
chr5 (154-201)||(12501431-12501478)
chr5 (154-201)||(39590739-39590786)
chr5 (154-199)||(37938494-37938539)
chr5 (154-201)||(744072-744119)
chr5 (154-201)||(20544189-20544236)
chr5 (154-201)||(27018122-27018169)
chr5 (165-200)||(30128626-30128661)
chr5 (138-172)||(37940150-37940184)
chr5 (127-172)||(9591607-9591652)
chr5 (127-172)||(27020242-27020287)
chr5 (165-200)||(7179660-7179695)
chr5 (154-201)||(19666650-19666697)
chr5 (138-172)||(745762-745796)
chr5 (138-172)||(42612417-42612451)
chr5 (154-194)||(9591612-9591652)
chr5 (165-201)||(9985359-9985395)
[»] chr4 (19 HSPs)
chr4 (154-201)||(54921403-54921450)
chr4 (156-201)||(7489289-7489334)
chr4 (154-199)||(8941256-8941301)
chr4 (154-199)||(30823697-30823742)
chr4 (165-201)||(7489380-7489416)
chr4 (154-202)||(41039571-41039619)
chr4 (154-201)||(20352026-20352073)
chr4 (154-201)||(23417198-23417245)
chr4 (127-172)||(4652788-4652833)
chr4 (127-172)||(41041626-41041671)
chr4 (157-201)||(43940412-43940456)
chr4 (165-201)||(46719727-46719763)
chr4 (138-172)||(7487074-7487108)
chr4 (154-199)||(4654995-4655040)
chr4 (136-169)||(43940412-43940445)
chr4 (165-197)||(23931593-23931625)
chr4 (168-208)||(26923856-26923896)
chr4 (165-201)||(43304884-43304920)
chr4 (144-172)||(49970407-49970435)
[»] chr3 (44 HSPs)
chr3 (154-201)||(11123659-11123706)
chr3 (154-201)||(13243587-13243634)
chr3 (154-201)||(23022039-23022086)
chr3 (154-201)||(27330113-27330160)
chr3 (154-201)||(52745654-52745701)
chr3 (154-199)||(4230848-4230893)
chr3 (154-199)||(47910953-47910998)
chr3 (165-201)||(53583729-53583765)
chr3 (154-201)||(40908503-40908550)
chr3 (154-200)||(37218168-37218214)
chr3 (165-199)||(55219906-55219940)
chr3 (127-172)||(30043657-30043702)
chr3 (154-199)||(30438267-30438312)
chr3 (127-172)||(37785255-37785300)
chr3 (154-199)||(37787277-37787322)
chr3 (154-199)||(44841226-44841271)
chr3 (154-199)||(50546473-50546518)
chr3 (169-202)||(51720859-51720892)
chr3 (165-201)||(18763938-18763974)
chr3 (165-201)||(36465585-36465621)
chr3 (136-172)||(40906006-40906042)
chr3 (154-201)||(2219990-2220037)
chr3 (154-201)||(15082709-15082756)
chr3 (154-201)||(22606859-22606906)
chr3 (154-201)||(29894771-29894818)
chr3 (154-201)||(41103738-41103785)
chr3 (125-172)||(44843364-44843411)
chr3 (138-172)||(4233214-4233248)
chr3 (138-172)||(6177377-6177411)
chr3 (138-172)||(11121085-11121119)
chr3 (138-172)||(13213299-13213333)
chr3 (138-172)||(22604724-22604758)
chr3 (165-199)||(27128194-27128228)
chr3 (138-172)||(37785292-37785326)
chr3 (138-172)||(42825868-42825902)
chr3 (154-200)||(45051738-45051784)
chr3 (154-188)||(53845139-53845173)
chr3 (127-172)||(2217873-2217918)
chr3 (143-172)||(15084737-15084766)
chr3 (143-172)||(27320870-27320899)
chr3 (168-201)||(41695914-41695947)
chr3 (165-201)||(8849752-8849788)
chr3 (169-201)||(31311666-31311698)
chr3 (165-201)||(50935460-50935496)
[»] chr1 (12 HSPs)
chr1 (154-201)||(31032086-31032133)
chr1 (165-200)||(30301000-30301035)
chr1 (154-201)||(33706580-33706627)
chr1 (154-201)||(44510431-44510478)
chr1 (168-201)||(30837762-30837795)
chr1 (165-201)||(7154883-7154919)
chr1 (165-201)||(36732507-36732543)
chr1 (154-188)||(30838873-30838907)
chr1 (138-172)||(33704416-33704450)
chr1 (143-172)||(10772559-10772588)
chr1 (143-172)||(31029910-31029939)
chr1 (127-172)||(44512554-44512599)
[»] scaffold0006 (1 HSPs)
scaffold0006 (155-201)||(56515-56561)
[»] scaffold0779 (1 HSPs)
scaffold0779 (154-201)||(170-217)
[»] chr2 (11 HSPs)
chr2 (154-201)||(3904919-3904966)
chr2 (127-172)||(3907071-3907116)
chr2 (154-199)||(25225413-25225458)
chr2 (165-201)||(14004023-14004059)
chr2 (165-201)||(28389954-28389990)
chr2 (154-201)||(38280259-38280306)
chr2 (165-199)||(75574-75608)
chr2 (165-199)||(39965180-39965214)
chr2 (127-172)||(14006216-14006261)
chr2 (156-201)||(21191877-21191922)
chr2 (165-201)||(1053134-1053170)
[»] scaffold0115 (2 HSPs)
scaffold0115 (154-199)||(30710-30755)
scaffold0115 (124-172)||(20715-20763)
[»] scaffold0208 (1 HSPs)
scaffold0208 (165-201)||(3860-3896)


Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 8445266 - 8445378
Alignment:
Q  11 agaaaataaatatagcaactagaaatcttgaaagagcactatcacacaaaatnnnnnnnntctgaaacaagttaattatcgtccttctcatgttaatgtt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| ||||||||||||||||    
T  8445266 agaaaataaatatagcaactagaaatcttgaaagagcactatcacacaaaat-aaaaatatctgaaacaagttaattatcgtctttctcatgttaatgtt 8445364  T
Q  111 aaccactataaacg 124  Q
     |||||| ||||||    
T  8445365 gaccactgtaaacg 8445378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 8454070 - 8454182
Alignment:
Q  11 agaaaataaatatagcaactagaaatcttgaaagagcactatcacacaaaatnnnnnnnntctgaaacaagttaattatcgtccttctcatgttaatgtt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| ||||||||||||||||    
T  8454070 agaaaataaatatagcaactagaaatcttgaaagagcactatcacacaaaat-aaaaatatctgaaacaagttaattatcgtctttctcatgttaatgtt 8454168  T
Q  111 aaccactataaacg 124  Q
     |||||| ||||||    
T  8454169 gaccactgtaaacg 8454182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 8445370 - 8445443
Alignment:
Q  202 ctgtaaacgaggttaaaatgattcacttttctattggaattctaatgacttcctagaatcactgatatacaatg 275  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  8445370 ctgtaaacgaggttaagatgattcacttttctgttggaattctaatgacttcctagaatcactgacatacaatg 8445443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 8454174 - 8454247
Alignment:
Q  202 ctgtaaacgaggttaaaatgattcacttttctattggaattctaatgacttcctagaatcactgatatacaatg 275  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  8454174 ctgtaaacgaggttaagatgattcacttttctgttggaattctaatgacttcctagaatcactgacatacaatg 8454247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 14105961 - 14106008
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  14105961 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 14106008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 16922271 - 16922318
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  16922271 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 16922318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 17557619 - 17557572
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  17557619 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 17557572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 23582236 - 23582283
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  23582236 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 23582283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 4587908 - 4587861
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  || ||||||||||||||||||||||||||||||||||    
T  4587908 agagggtaaaatatcctctaaataagagagggtaatctagaaaaaacc 4587861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 27784448 - 27784495
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||||    
T  27784448 agagggtaaaataccctctaaataagagagggtaatctaaaaaaaacc 27784495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 8439994 - 8440045
Alignment:
Q  11 agaaaataaatatagcaactagaaatcttgaaagagcactatcacacaaaat 62  Q
    ||||||||| || |||||||  |||||||||||||||||||||| |||||||    
T  8439994 agaaaataattaaagcaactgtaaatcttgaaagagcactatcaaacaaaat 8440045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 11837846 - 11837812
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  11837846 ttaccctctcttgtttagagggtaatttaccctct 11837812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 14103797 - 14103831
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  14103797 ttaccctctcttgtttagagggtaatttaccctct 14103831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 23580091 - 23580125
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  23580091 ttaccctctcttgtttagagggtaatttaccctct 23580125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 27782272 - 27782306
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  27782272 ttaccctctcttgtttagagggtaatttaccctct 27782306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 12783005 - 12782973
Alignment:
Q  171 ctaaataagagagggtaatctagaaaaaaccct 203  Q
    ||||||||||||||||||| |||||||||||||    
T  12783005 ctaaataagagagggtaatgtagaaaaaaccct 12782973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 17946630 - 17946582
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaaccc 202  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||    
T  17946630 agagggtaaaataccctctaaataagagagggtaatctagaaaaaaccc 17946582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 3703215 - 3703168
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  3703215 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 3703168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 16097635 - 16097682
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  16097635 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 16097682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 18957427 - 18957474
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  18957427 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 18957474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 278754 - 278802
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaaccc 202  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  278754 agagggtaaaataccctctaaatatgagagggtaatctagaaaaaaccc 278802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 637098 - 637050
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaaccc 202  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  637098 agagggtaaaataccctctaaatatgagagggtaatctagaaaaaaccc 637050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 822901 - 822853
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaaccc 202  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  822901 agagggtaaaataccctctaaatatgagagggtaatctagaaaaaaccc 822853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 23345207 - 23345171
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||||||||||||||||||||||||||||    
T  23345207 taccctctaaataagagagggtaatctagaaaaaacc 23345171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 26965411 - 26965364
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||    
T  26965411 agagggtaaaataccctctaaataagagagggtaatttagaaaaaacc 26965364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 38059290 - 38059243
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||||    
T  38059290 agagggtaaaataccctctaaataagagagggtaatctaaaaaaaacc 38059243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 41182447 - 41182400
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||    
T  41182447 agagggtaaaataccctctaaataagagaggataatctagaaaaaacc 41182400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 4621529 - 4621484
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||    
T  4621529 agagggtaaaataccctctaaataagatagggtaatctagaaaaaa 4621484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 27911883 - 27911928
Alignment:
Q  127 tgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||    
T  27911883 tgaggactacgttaccctctcttgtttagagggtaatttaccctct 27911928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 27958302 - 27958347
Alignment:
Q  127 tgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||    
T  27958302 tgaggactacgttaccctctcttgtttagagggtaatttaccctct 27958347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 39859980 - 39860017
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaaccc 202  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  39859980 taccctctaaacaagagagggtaatctagaaaaaaccc 39860017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 4622952 - 4622916
Alignment:
Q  136 cattactctctcttgtttagagggtaatttaccctct 172  Q
    |||||| ||||||||||||||||||||||||||||||    
T  4622952 cattaccctctcttgtttagagggtaatttaccctct 4622916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 17852425 - 17852389
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||||||| |||||||||||||||||||||||    
T  17852425 taccctctaaatatgagagggtaatctagaaaaaacc 17852389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 199
Target Start/End: Original strand, 6096867 - 6096898
Alignment:
Q  168 cctctaaataagagagggtaatctagaaaaaa 199  Q
    ||||||||||||||||||||||||||||||||    
T  6096867 cctctaaataagagagggtaatctagaaaaaa 6096898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 15883623 - 15883589
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    ||||||||||||||||||||||||||||| |||||    
T  15883623 ttactctctcttgtttagagggtaatttatcctct 15883589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 25583812 - 25583778
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  25583812 ttaccctctcttgtttagagggtaatttaccctct 25583778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 38576622 - 38576588
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaa 199  Q
    ||||||||||| |||||||||||||||||||||||    
T  38576622 taccctctaaacaagagagggtaatctagaaaaaa 38576588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 15881278 - 15881233
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  ||||||||||||||||||| |||||||| ||||||    
T  15881278 agagggtaaaataccctctaaataagagagagtaatctaaaaaaaa 15881233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 30476019 - 30475974
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  |||||| |||| |||||||||||||||||||||||    
T  30476019 agagggtaaaataccctataaacaagagagggtaatctagaaaaaa 30475974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 276588 - 276624
Alignment:
Q  136 cattactctctcttgtttagagggtaatttaccctct 172  Q
    |||||| |||||||||||| |||||||||||||||||    
T  276588 cattaccctctcttgtttatagggtaatttaccctct 276624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 639261 - 639225
Alignment:
Q  136 cattactctctcttgtttagagggtaatttaccctct 172  Q
    |||||| |||||||||||| |||||||||||||||||    
T  639261 cattaccctctcttgtttatagggtaatttaccctct 639225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 825067 - 825031
Alignment:
Q  136 cattactctctcttgtttagagggtaatttaccctct 172  Q
    |||||| |||||||||||| |||||||||||||||||    
T  825067 cattaccctctcttgtttatagggtaatttaccctct 825031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 2081398 - 2081366
Alignment:
Q  169 ctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||| ||||||||||||||||||||    
T  2081398 ctctaaataagatagggtaatctagaaaaaacc 2081366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 17853496 - 17853448
Alignment:
Q  124 ggatgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    |||||||| || | |||| ||||||||||||||||||||||||| ||||    
T  17853496 ggatgaggtctacgttaccctctcttgtttagagggtaatttactctct 17853448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 17948706 - 17948670
Alignment:
Q  136 cattactctctcttgtttagagggtaatttaccctct 172  Q
    |||||| |||||||||||||||||||||||| |||||    
T  17948706 cattaccctctcttgtttagagggtaatttatcctct 17948670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 35019271 - 35019235
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||||||| |||||||| |||||||||||    
T  35019271 taccctctaaataagatagggtaatgtagaaaaaacc 35019235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 723531 - 723484
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  723531 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 723484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 16273955 - 16273908
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  16273955 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 16273908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 20122349 - 20122396
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  20122349 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 20122396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 4657054 - 4657016
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaaccct 203  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4657054 taccctctaaataagagagggtaatctagaaaaaaccct 4657016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 44456942 - 44456896
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaac 200  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||    
T  44456942 agagggtaaaataccctctaaataagagagggtaatctagaaaaaac 44456896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 3412721 - 3412676
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  |||||||||||||||||||||||||||||||||||    
T  3412721 agagggtaaaataccctctaaataagagagggtaatctagaaaaaa 3412676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 4861946 - 4861982
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||||||||||||||||||||||||||||    
T  4861946 taccctctaaataagagagggtaatctagaaaaaacc 4861982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 23592574 - 23592538
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||||||||||||||||||||||||||||    
T  23592574 taccctctaaataagagagggtaatctagaaaaaacc 23592538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 41338316 - 41338352
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||||||||||||||||||||||||||||    
T  41338316 taccctctaaataagagagggtaatctagaaaaaacc 41338352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 33244654 - 33244607
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  ||| |||||||||||||||||||||||||||||||||    
T  33244654 agagggtaaaatactctctaaataagagagggtaatctagaaaaaacc 33244607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 38179706 - 38179659
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||||    
T  38179706 agagggtaaaataccctctaaataagagagggtaatctaaaaaaaacc 38179659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 16277732 - 16277698
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||||||||||||||||||||||||||||||||||    
T  16277732 ttactctctcttgtttagagggtaatttaccctct 16277698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 40013657 - 40013623
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||||||||||||||||||||||||||||    
T  40013657 taccctctaaataagagagggtaatctagaaaaaa 40013623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 47906992 - 47906947
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  ||||||||||||||||||||| |||||||||||||    
T  47906992 agagggtaaaataccctctaaataagagagggaaatctagaaaaaa 47906947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 48684614 - 48684647
Alignment:
Q  168 cctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||||||||||||||||||||||||||||    
T  48684614 cctctaaataagagagggtaatctagaaaaaacc 48684647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 20119872 - 20119919
Alignment:
Q  125 gatgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    ||||||| || | |||| ||||||||||||||||||||||||||||||    
T  20119872 gatgaggtctacgttaccctctcttgtttagagggtaatttaccctct 20119919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 48950278 - 48950231
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||| || |||||||||||||||||||||||||||    
T  48950278 agagggtaaaataccctttatataagagagggtaatctagaaaaaacc 48950231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 725692 - 725658
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  725692 ttaccctctcttgtttagagggtaatttaccctct 725658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 4859584 - 4859618
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  4859584 ttaccctctcttgtttagagggtaatttaccctct 4859618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 21817383 - 21817429
Alignment:
Q  155 gagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||  ||||||||||||||||||||||||| ||||| |||||    
T  21817383 gagggtaaaataccctctaaataagagagggtaatatagaagaaacc 21817429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 41858712 - 41858678
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  41858712 ttaccctctcttgtttagagggtaatttaccctct 41858678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 44459462 - 44459428
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  44459462 ttaccctctcttgtttagagggtaatttaccctct 44459428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 48952335 - 48952301
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    ||||||||||||||||| |||||||||||||||||    
T  48952335 ttactctctcttgtttatagggtaatttaccctct 48952301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 41856317 - 41856272
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  ||||||||| |||| ||||||||||||||||||||    
T  41856317 agagggtaaaataccctctatataaaagagggtaatctagaaaaaa 41856272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 33982635 - 33982671
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  33982635 taccctctaaacaagagagggtaatgtagaaaaaacc 33982671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 41287589 - 41287553
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  41287589 taccctctaaacaagagagggttatctagaaaaaacc 41287553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 822865 - 822818
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  822865 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 822818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 9593857 - 9593904
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  9593857 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 9593904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 12501431 - 12501478
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  12501431 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 12501478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 39590739 - 39590786
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  39590739 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 39590786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 37938539 - 37938494
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  |||||||||||||||||||||||||||||||||||    
T  37938539 agagggtaaaataccctctaaataagagagggtaatctagaaaaaa 37938494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 744119 - 744072
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||    
T  744119 agagggtaaaataccctctaaataagagaggataatctagaaaaaacc 744072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 20544236 - 20544189
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||    
T  20544236 agagggtaaaataccctctaaataagagaggataatctagaaaaaacc 20544189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 27018169 - 27018122
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||| ||||||||||||||||||||||||||||||||    
T  27018169 agagggtaaaataccttctaaataagagagggtaatctagaaaaaacc 27018122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 200
Target Start/End: Complemental strand, 30128661 - 30128626
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaac 200  Q
    ||||||||||||||||||||||||||||||||||||    
T  30128661 taccctctaaataagagagggtaatctagaaaaaac 30128626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 37940184 - 37940150
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||||||||||||||||||||||||||||||||||    
T  37940184 ttactctctcttgtttagagggtaatttaccctct 37940150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 9591607 - 9591652
Alignment:
Q  127 tgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||    
T  9591607 tgaggtctacattaccctctcttgtttagagggtaatttaccctct 9591652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 27020287 - 27020242
Alignment:
Q  127 tgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||    
T  27020287 tgaggcctacattaccctctcttgtttagagggtaatttaccctct 27020242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 200
Target Start/End: Complemental strand, 7179695 - 7179660
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaac 200  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7179695 taccctctaaacaagagagggtaatctagaaaaaac 7179660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 19666650 - 19666697
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  19666650 agagggtaaaataccttctaaattagagagggtaatctagaaaaaacc 19666697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 745796 - 745762
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  745796 ttaccctctcttgtttagagggtaatttaccctct 745762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 42612451 - 42612417
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  42612451 ttaccctctcttgtttagagggtaatttaccctct 42612417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 9591652 - 9591612
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctaga 194  Q
    ||||||||| |||||||||||| ||||||||||||| ||||    
T  9591652 agagggtaaattaccctctaaacaagagagggtaatgtaga 9591612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 9985395 - 9985359
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  9985395 taccctctaaacaagagagggtaatttagaaaaaacc 9985359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 54921403 - 54921450
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  54921403 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 54921450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 7489289 - 7489334
Alignment:
Q  156 agggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||  |||||||||||||||||||||||||||||||||||||    
T  7489289 agggtaaaataccctctaaataagagagggtaatctagaaaaaacc 7489334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 8941256 - 8941301
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  |||||||||||||||||||||||||||||||||||    
T  8941256 agagggtaaaataccctctaaataagagagggtaatctagaaaaaa 8941301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 30823742 - 30823697
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  |||||||||||||||||||||||||||||||||||    
T  30823742 agagggtaaaataccctctaaataagagagggtaatctagaaaaaa 30823697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 7489380 - 7489416
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||||||||||||||||||||||||||||    
T  7489380 taccctctaaataagagagggtaatctagaaaaaacc 7489416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 41039619 - 41039571
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaaccc 202  Q
    |||||||||  |||| |||||||||||||||||||||||||||||||||    
T  41039619 agagggtaaaataccttctaaataagagagggtaatctagaaaaaaccc 41039571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 20352073 - 20352026
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  ||| |||||||||||||||||||||||||||||||||    
T  20352073 agagggtaaaatactctctaaataagagagggtaatctagaaaaaacc 20352026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 23417245 - 23417198
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  ||||||||||||||||||||||||||||| |||||||    
T  23417245 agagggtaaaataccctctaaataagagagggtaatctagcaaaaacc 23417198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 4652788 - 4652833
Alignment:
Q  127 tgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||    
T  4652788 tgaggcctacattaccctctcttgtttagagggtaatttaccctct 4652833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 41041671 - 41041626
Alignment:
Q  127 tgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||    
T  41041671 tgaggcctacattaccctctcttgtttagagggtaatttaccctct 41041626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 43940412 - 43940456
Alignment:
Q  157 gggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||| |||||||||||| ||||||||||||| |||||||||||    
T  43940412 gggtaaattaccctctaaacaagagagggtaatgtagaaaaaacc 43940456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 46719727 - 46719763
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||||||||||||||||||| ||||||||    
T  46719727 taccctctaaataagagagggtaatctataaaaaacc 46719763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 7487074 - 7487108
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  7487074 ttaccctctcttgtttagagggtaatttaccctct 7487108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 4654995 - 4655040
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  ||||||||||| |||| ||||||||||||||||||    
T  4654995 agagggtaaaataccctctaaacaagatagggtaatctagaaaaaa 4655040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 43940445 - 43940412
Alignment:
Q  136 cattactctctcttgtttagagggtaatttaccc 169  Q
    |||||| |||||||||||||||||||||||||||    
T  43940445 cattaccctctcttgtttagagggtaatttaccc 43940412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 23931625 - 23931593
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaa 197  Q
    ||||||||||| |||||||||||||||||||||    
T  23931625 taccctctaaacaagagagggtaatctagaaaa 23931593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 26923856 - 26923896
Alignment:
Q  168 cctctaaataagagagggtaatctagaaaaaaccctgtaaa 208  Q
    |||||||| ||||||||||||| ||||||||||||| ||||    
T  26923856 cctctaaacaagagagggtaatgtagaaaaaaccctttaaa 26923896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 43304884 - 43304920
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  43304884 taccctctaaacaagagagggtaatctaaaaaaaacc 43304920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 49970435 - 49970407
Alignment:
Q  144 tctcttgtttagagggtaatttaccctct 172  Q
    |||||||||||||||||||||||||||||    
T  49970435 tctcttgtttagagggtaatttaccctct 49970407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 11123659 - 11123706
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  11123659 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 11123706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 13243587 - 13243634
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  13243587 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 13243634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 23022039 - 23022086
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  23022039 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 23022086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 27330160 - 27330113
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  27330160 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 27330113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 52745701 - 52745654
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||    
T  52745701 agagggtattttaccctctaaataagagagggtgatctagaaaaaacc 52745654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 4230893 - 4230848
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  |||||||||||||||||||||||||||||||||||    
T  4230893 agagggtaaaataccctctaaataagagagggtaatctagaaaaaa 4230848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 47910998 - 47910953
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  47910998 agagggtaaattaccctctaaataagagaggataatctagaaaaaa 47910953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 53583729 - 53583765
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||||||||||||||||||||||||||||    
T  53583729 taccctctaaataagagagggtaatctagaaaaaacc 53583765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 40908503 - 40908550
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||||    
T  40908503 agagggtaaaataccctctaaataagagagggtaatctaaaaaaaacc 40908550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 37218214 - 37218168
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaac 200  Q
    |||||||||  |||||||||||||||||||||||||||| |||||||    
T  37218214 agagggtaaaataccctctaaataagagagggtaatctaaaaaaaac 37218168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 55219906 - 55219940
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||||||||||||||||||||||||||||    
T  55219906 taccctctaaataagagagggtaatctagaaaaaa 55219940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 30043702 - 30043657
Alignment:
Q  127 tgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||    
T  30043702 tgaggcctacattaccctctcttgtttagagggtaatttaccctct 30043657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 30438312 - 30438267
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||    
T  30438312 agagggtaaaataccctctaaataagagagggtaatctaaaaaaaa 30438267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 37785255 - 37785300
Alignment:
Q  127 tgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||    
T  37785255 tgaggactacgttaccctctcttgtttagagggtaatttaccctct 37785300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 37787277 - 37787322
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||    
T  37787277 agagggtaaaataccctctaaataagagagggtaatctaaaaaaaa 37787322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 44841271 - 44841226
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||    
T  44841271 agagggtaaaataccctctaaataagagacggtaatctagaaaaaa 44841226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 50546518 - 50546473
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||    
T  50546518 agagggtaaaataccctataaataagagagggtaatctagaaaaaa 50546473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 51720892 - 51720859
Alignment:
Q  169 ctctaaataagagagggtaatctagaaaaaaccc 202  Q
    ||||||||||||||||||||||||||||||||||    
T  51720892 ctctaaataagagagggtaatctagaaaaaaccc 51720859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 18763938 - 18763974
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||||||||| ||||||||||||||||||    
T  18763938 taccctctaaataagagaaggtaatctagaaaaaacc 18763974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 36465621 - 36465585
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||||| |||||||||||||||||||||||||    
T  36465621 taccctctaaacaagagagggtaatctagaaaaaacc 36465585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 40906006 - 40906042
Alignment:
Q  136 cattactctctcttgtttagagggtaatttaccctct 172  Q
    |||||| ||||||||||||||||||||||||||||||    
T  40906006 cattaccctctcttgtttagagggtaatttaccctct 40906042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 2219990 - 2220037
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  ||| |||||||||||||||||||||||| ||||||||    
T  2219990 agagggtaaaatactctctaaataagagagggtaatctaaaaaaaacc 2220037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 15082756 - 15082709
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||| ||||||||||||||| ||||||||||||||||    
T  15082756 agagggtaaaataccttctaaataagagaggataatctagaaaaaacc 15082709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 22606859 - 22606906
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||| ||||||| ||||||||    
T  22606859 agagggtaaaataccctctaaataagagaggataatctaaaaaaaacc 22606906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 29894771 - 29894818
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  ||| |||||||||||||||| ||||||||||||||||    
T  29894771 agagggtaaaatactctctaaataagagaggataatctagaaaaaacc 29894818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 41103738 - 41103785
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||| ||| ||||||||||||||    
T  41103738 agagggtaaaataccctctaaataagagatggtgatctagaaaaaacc 41103785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 44843411 - 44843364
Alignment:
Q  125 gatgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    ||||||| || | |||| ||||||||||||||||||||||||||||||    
T  44843411 gatgaggcctacgttaccctctcttgtttagagggtaatttaccctct 44843364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 4233248 - 4233214
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  4233248 ttaccctctcttgtttagagggtaatttaccctct 4233214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 6177411 - 6177377
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  6177411 ttacgctctcttgtttagagggtaatttaccctct 6177377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 11121085 - 11121119
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  11121085 ttaccctctcttgtttagagggtaatttaccctct 11121119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 13213299 - 13213333
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  13213299 ttaccctctcttgtttagagggtaatttaccctct 13213333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 22604724 - 22604758
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  22604724 ttaccctctcttgtttagagggtaatttaccctct 22604758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 27128194 - 27128228
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||||||||| ||||||||||||||||||    
T  27128194 taccctctaaataagatagggtaatctagaaaaaa 27128228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 37785292 - 37785326
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  37785292 ttaccctctcttgtttagagggtaatttaccctct 37785326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 42825868 - 42825902
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    ||||| |||||||||||||||||||||||||||||    
T  42825868 ttactatctcttgtttagagggtaatttaccctct 42825902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 45051784 - 45051738
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaac 200  Q
    |||||||||  || ||||||||||||||||| |||||||||||||||    
T  45051784 agagggtaaaatatcctctaaataagagaggataatctagaaaaaac 45051738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 53845173 - 53845139
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaa 188  Q
    ||||||||| |||||||||||||||||||||||||    
T  53845173 agagggtaaattaccctctaaataagagagggtaa 53845139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 2217873 - 2217918
Alignment:
Q  127 tgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    ||||| || |||||||||||||| |||||| |||||||||||||||    
T  2217873 tgaggcctacattactctctcttatttagaaggtaatttaccctct 2217918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 172
Target Start/End: Complemental strand, 15084766 - 15084737
Alignment:
Q  143 ctctcttgtttagagggtaatttaccctct 172  Q
    ||||||||||||||||||||||||||||||    
T  15084766 ctctcttgtttagagggtaatttaccctct 15084737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 27320870 - 27320899
Alignment:
Q  143 ctctcttgtttagagggtaatttaccctct 172  Q
    ||||||||||||||||||||||||||||||    
T  27320870 ctctcttgtttagagggtaatttaccctct 27320899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 41695947 - 41695914
Alignment:
Q  168 cctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||||||| ||||||||||||||||||||    
T  41695947 cctctaaataagatagggtaatctagaaaaaacc 41695914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 8849788 - 8849752
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  8849788 taccctctaaataagatagggtaacctagaaaaaacc 8849752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 31311698 - 31311666
Alignment:
Q  169 ctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||| |||||||||||||||||||||||||    
T  31311698 ctctaaacaagagagggtaatctagaaaaaacc 31311666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 50935496 - 50935460
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  50935496 taccctctaaacaagagagggtaatgtagaaaaaacc 50935460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 31032086 - 31032133
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  31032086 agagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 31032133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 200
Target Start/End: Complemental strand, 30301035 - 30301000
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaac 200  Q
    ||||||||||||||||||||||||||||||||||||    
T  30301035 taccctctaaataagagagggtaatctagaaaaaac 30301000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 33706580 - 33706627
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||||    
T  33706580 agagggtaaaataccctctaaataagatagggtaatctagaaaaaacc 33706627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 44510478 - 44510431
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||||    
T  44510478 agagggtaaaataccctctaaataagatagggtaatctagaaaaaacc 44510431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 30837795 - 30837762
Alignment:
Q  168 cctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||||||||||||||||||||||||||||    
T  30837795 cctctaaataagagagggtaatctagaaaaaacc 30837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 7154883 - 7154919
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||||||||||||||||||| ||||||||    
T  7154883 taccctctaaataagagagggtaatctaaaaaaaacc 7154919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 36732507 - 36732543
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||||||||| |||||||||||||||||||||    
T  36732507 taccctctaaataagcgagggtaatctagaaaaaacc 36732543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 30838873 - 30838907
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaa 188  Q
    ||||||||| |||||||||||||||||||||||||    
T  30838873 agagggtaaattaccctctaaataagagagggtaa 30838907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 33704416 - 33704450
Alignment:
Q  138 ttactctctcttgtttagagggtaatttaccctct 172  Q
    |||| ||||||||||||||||||||||||||||||    
T  33704416 ttaccctctcttgtttagagggtaatttaccctct 33704450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 10772559 - 10772588
Alignment:
Q  143 ctctcttgtttagagggtaatttaccctct 172  Q
    ||||||||||||||||||||||||||||||    
T  10772559 ctctcttgtttagagggtaatttaccctct 10772588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 31029910 - 31029939
Alignment:
Q  143 ctctcttgtttagagggtaatttaccctct 172  Q
    ||||||||||||||||||||||||||||||    
T  31029910 ctctcttgtttagagggtaatttaccctct 31029939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 44512599 - 44512554
Alignment:
Q  127 tgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    ||||| || ||||||||||||||||||||||| |||||||| ||||    
T  44512599 tgaggcctacattactctctcttgtttagaggttaatttactctct 44512554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 56515 - 56561
Alignment:
Q  155 gagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||    
T  56515 gagggtaaaataccctctaaataagagagggtaatctagaaaaaacc 56561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0779 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 170 - 217
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||    
T  170 agagggtaaaataccctctaaataagagagggtaatatagaaaaaacc 217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 3904966 - 3904919
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||||    
T  3904966 agagggtaaaataccctctaaataagagagggtaatctaaaaaaaacc 3904919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 3907116 - 3907071
Alignment:
Q  127 tgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||    
T  3907116 tgaggcctacattacactctcttgtttagagggtaatttaccctct 3907071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 25225413 - 25225458
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||    
T  25225413 agagggtaaaataccctctaaataagagagggtaatctaaaaaaaa 25225458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 14004059 - 14004023
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||||||||||||||||||| ||||||||    
T  14004059 taccctctaaataagagagggtaatctaaaaaaaacc 14004023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 28389990 - 28389954
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||||||||||||||||||||| ||||||||    
T  28389990 taccctctaaataagagagggtaatctaaaaaaaacc 28389954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 38280306 - 38280259
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||||  |||||||||||||| | ||||||||||||||||||||    
T  38280306 agagggtaaaataccctctaaataaaatagggtaatctagaaaaaacc 38280259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 75608 - 75574
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||||||| ||||||||||||||||||||    
T  75608 taccctctaaataaaagagggtaatctagaaaaaa 75574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 39965214 - 39965180
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||||||||||||||||||| ||||||||    
T  39965214 taccctctaaataagagagggtaatccagaaaaaa 39965180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 14006261 - 14006216
Alignment:
Q  127 tgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    ||||| || |||||| |||||||||| |||||||||||||||||||    
T  14006261 tgaggcctacattaccctctcttgttaagagggtaatttaccctct 14006216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 21191877 - 21191922
Alignment:
Q  156 agggtaatttaccctctaaataagagagggtaatctagaaaaaacc 201  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||    
T  21191877 agggtaaaataccctctaaacaagagagggtaatgtagaaaaaacc 21191922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 1053170 - 1053134
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  1053170 taccctctaaacaagagagagtaatctagaaaaaacc 1053134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 30710 - 30755
Alignment:
Q  154 agagggtaatttaccctctaaataagagagggtaatctagaaaaaa 199  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||    
T  30710 agagggtaaaataccctctaaataagatagggtaatctagaaaaaa 30755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 20715 - 20763
Alignment:
Q  124 ggatgaggactgcattactctctcttgtttagagggtaatttaccctct 172  Q
    |||||||| || | |||| || |||||||||||||||||||||||||||    
T  20715 ggatgaggcctacgttaccctatcttgtttagagggtaatttaccctct 20763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 3896 - 3860
Alignment:
Q  165 taccctctaaataagagagggtaatctagaaaaaacc 201  Q
    ||||||||||| |||||||||||||||||||||||||    
T  3896 taccctctaaacaagagagggtaatctagaaaaaacc 3860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University