View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1588_low_1 (Length: 593)

Name: NF1588_low_1
Description: NF1588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1588_low_1
NF1588_low_1
[»] chr3 (16 HSPs)
chr3 (334-577)||(54733795-54734052)
chr3 (184-292)||(54734146-54734254)
chr3 (121-171)||(54528983-54529033)
chr3 (107-171)||(33148826-33148890)
chr3 (107-171)||(33450047-33450111)
chr3 (114-171)||(7546078-7546135)
chr3 (126-171)||(21566981-21567026)
chr3 (126-171)||(50663876-50663921)
chr3 (107-166)||(52311860-52311919)
chr3 (115-169)||(3540254-3540308)
chr3 (121-171)||(42947376-42947426)
chr3 (121-171)||(47064865-47064915)
chr3 (114-171)||(42951008-42951065)
chr3 (311-340)||(54734098-54734127)
chr3 (127-171)||(13843626-13843670)
chr3 (127-171)||(44430419-44430463)
[»] chr7 (14 HSPs)
chr7 (125-171)||(28138760-28138806)
chr7 (125-171)||(26009370-26009416)
chr7 (114-171)||(23345066-23345123)
chr7 (114-171)||(36325620-36325677)
chr7 (117-168)||(23344444-23344495)
chr7 (125-171)||(26011984-26012030)
chr7 (107-171)||(10526997-10527061)
chr7 (125-171)||(19931489-19931535)
chr7 (125-171)||(33839473-33839519)
chr7 (125-171)||(41957597-41957643)
chr7 (121-171)||(42548162-42548212)
chr7 (107-171)||(25428732-25428796)
chr7 (107-171)||(28139448-28139512)
chr7 (107-171)||(31852636-31852700)
[»] scaffold0163 (1 HSPs)
scaffold0163 (121-171)||(35777-35827)
[»] chr6 (7 HSPs)
chr6 (125-171)||(14153355-14153401)
chr6 (123-171)||(806546-806594)
chr6 (115-171)||(2559640-2559696)
chr6 (125-171)||(1826590-1826636)
chr6 (107-147)||(1826136-1826176)
chr6 (121-171)||(35060922-35060972)
chr6 (114-171)||(6819611-6819668)
[»] chr2 (9 HSPs)
chr2 (107-169)||(17797025-17797087)
chr2 (109-169)||(9539093-9539153)
chr2 (125-171)||(25389881-25389927)
chr2 (133-171)||(28360221-28360259)
chr2 (123-171)||(31133180-31133228)
chr2 (107-166)||(38147085-38147144)
chr2 (125-171)||(12965050-12965096)
chr2 (125-171)||(22788016-22788062)
chr2 (127-171)||(20685007-20685051)
[»] chr4 (7 HSPs)
chr4 (121-171)||(33164532-33164582)
chr4 (126-171)||(38677694-38677739)
chr4 (121-171)||(28796621-28796671)
chr4 (121-171)||(36217871-36217921)
chr4 (117-171)||(37576544-37576598)
chr4 (125-171)||(54208181-54208227)
chr4 (127-160)||(37030921-37030954)
[»] chr1 (10 HSPs)
chr1 (121-171)||(3792297-3792347)
chr1 (125-171)||(5602945-5602991)
chr1 (123-169)||(9862921-9862967)
chr1 (121-171)||(37260940-37260990)
chr1 (124-168)||(35392134-35392178)
chr1 (121-171)||(20447024-20447074)
chr1 (121-171)||(20532787-20532837)
chr1 (125-171)||(28476013-28476059)
chr1 (123-171)||(5119060-5119108)
chr1 (107-171)||(42883109-42883173)
[»] chr8 (2 HSPs)
chr8 (107-171)||(3588558-3588622)
chr8 (127-171)||(9418588-9418632)
[»] chr5 (2 HSPs)
chr5 (117-171)||(3758923-3758977)
chr5 (123-171)||(38739388-38739436)
[»] scaffold1763 (1 HSPs)
scaffold1763 (127-171)||(397-441)
[»] scaffold0246 (1 HSPs)
scaffold0246 (127-171)||(2886-2930)
[»] scaffold0041 (1 HSPs)
scaffold0041 (127-171)||(23488-23532)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 5e-82; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 334 - 577
Target Start/End: Complemental strand, 54734052 - 54733795
Alignment:
Q  334 ttaattttcaatcatagaggaaggtggattgagccattt--aactgttgaattgaagctcatcaaagagggaaagttatcataatatctattttctcctt 431  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  54734052 ttaattttcaatcatagaggaaggtggattgagccatttttaactgttgaattgaagctcatcaaagagggaaagttatcataatatcttttttct-ctt 54733954  T
Q  432 gagaatcttgtacaattcctagctaatt---------------aaaagcaaaagctaaaacatcaaatttagacctagagccnnnnnnngaagttaaaat 516  Q
    ||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||        ||||||| ||    
T  54733953 gagaatcttgtacaattcctagctaattaaaagcaaagatataaaaagcaaaagctaaaacatcaaatttagacctagagccaaaaaa--aagttaacat 54733856  T
Q  517 aataatgtattttggcttgtgtagcaccattccaaattccaaataagagtgtgtttagctt 577  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54733855 aataatgtattttggcttgtgtagcaccattccaaattccaaataagagtgtgtttagctt 54733795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 184 - 292
Target Start/End: Complemental strand, 54734254 - 54734146
Alignment:
Q  184 tatcgtgtttctttgttagagtggtgatgttgattcgaccaaagaaaaaagagtggtaatgctacagaaaatgttgatattattcggtgtaaattacttt 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54734254 tatcgtgtttctttgttagagtggtgatgttgattcgaccaaagaaaaaagagtggtaatgctacagaaaatgttgatattattcggtgtaaattacttt 54734155  T
Q  284 caactcaca 292  Q
    |||||||||    
T  54734154 caactcaca 54734146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 54528983 - 54529033
Alignment:
Q  121 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  54528983 tggacatttacattgagaatgagcaaaatcattttggtaaagagcagaatt 54529033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 33148890 - 33148826
Alignment:
Q  107 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||| |||||||||| |||||||||||| ||| |||||||| | ||||||||| ||||||||||    
T  33148890 acgcaaaggcaatatgtacatttactttgggaacgagcaaaaacgtttgggtaatgagcagaatt 33148826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 33450047 - 33450111
Alignment:
Q  107 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||| | ||||||||||||||| |||||||||||||||||   ||||||||| ||||||||||    
T  33450047 acgcagggacaatatggacatttattttgagaatgagcaaaacagtttgggtaatgagcagaatt 33450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 7546135 - 7546078
Alignment:
Q  114 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||||||||||||| ||| |||| |||   ||||||||||||||||||||    
T  7546135 ggcaatatggacatttactttgggaacgagcgaaacagtttgggtaaagagcagaatt 7546078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 21566981 - 21567026
Alignment:
Q  126 atttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||    
T  21566981 atttacattgggaatgagaaaaatcatttgggtaaagagcagaatt 21567026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 50663921 - 50663876
Alignment:
Q  126 atttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||||    
T  50663921 atttactttgggaatgagcgaaatcatttgggtgaagagcagaatt 50663876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 52311860 - 52311919
Alignment:
Q  107 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagca 166  Q
    |||||| |||||||| ||||||||||||| ||| ||||||||  |||| |||||||||||    
T  52311860 acgcaggggcaatatagacatttactttgggaacgagcaaaacaattttggtaaagagca 52311919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 3540254 - 3540308
Alignment:
Q  115 gcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 169  Q
    ||||||||||||||||||||| ||| ||||||||   ||| ||||||||||||||    
T  3540254 gcaatatggacatttactttgggaacgagcaaaacagttttggtaaagagcagaa 3540308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 42947426 - 42947376
Alignment:
Q  121 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||| |||||||||||||||||  ||||||||| ||||| ||||||||||    
T  42947426 tggacttttactttgagaatgagtgaaatcatttaggtaatgagcagaatt 42947376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 47064915 - 47064865
Alignment:
Q  121 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||| ||||||||| ||||||||| |||||||||||||| ||||| ||||    
T  47064915 tggacttttactttgggaatgagcagaatcatttgggtaatgagcataatt 47064865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 42951008 - 42951065
Alignment:
Q  114 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||||||||||||| ||||||||  ||  ||||| |||| ||||||||||    
T  42951008 ggcaatatggacatttactttgggaatgagcggaagtatttgagtaatgagcagaatt 42951065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 340
Target Start/End: Complemental strand, 54734127 - 54734098
Alignment:
Q  311 cattcctatgctaacttataattttaattt 340  Q
    ||||||||||||||||||||||||||||||    
T  54734127 cattcctatgctaacttataattttaattt 54734098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 13843626 - 13843670
Alignment:
Q  127 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||| |||||||| ||| ||||||||||| ||||||||||    
T  13843626 tttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 13843670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 44430463 - 44430419
Alignment:
Q  127 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||| |||||||||||| ||||||| ||| ||||||||||    
T  44430463 tttactttgggaatgagcaaaaccatttggataatgagcagaatt 44430419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 28138806 - 28138760
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  28138806 catttactttgggaatgagcaaaatcatttgggtaaagagcagaatt 28138760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 26009416 - 26009370
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  26009416 catttactttgggaatgagcaaaatcgtttgggtaaagagcagaatt 26009370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 23345066 - 23345123
Alignment:
Q  114 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||| ||||||| |||| |||||||||||||| ||||||||||||||| ||||    
T  23345066 ggcaatatgaacatttattttgggaatgagcaaaatcgtttgggtaaagagcataatt 23345123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 36325677 - 36325620
Alignment:
Q  114 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||||||||||||||||| ||||||||   |||| |||||||||||||||    
T  36325677 ggcaatatggacatttactttgagaacgagcaaaactgtttgagtaaagagcagaatt 36325620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 23344495 - 23344444
Alignment:
Q  117 aatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcaga 168  Q
    |||||||||||||||||| | ||||||||||| | |||||||||||||||||    
T  23344495 aatatggacatttactttaaaaatgagcaaaaccgtttgggtaaagagcaga 23344444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 26011984 - 26012030
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||    
T  26011984 catttactttgagaatgattaaaatcgtttgggtaaagagcagaatt 26012030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 10526997 - 10527061
Alignment:
Q  107 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||| ||||||| ||||||||||||||| ||||||   ||  ||||||||||||||||||||||    
T  10526997 acgcaaaggcaatttggacatttactttgggaatgattgaatccatttgggtaaagagcagaatt 10527061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 19931535 - 19931489
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||||||| |||||||| ||||| | ||||||||||||||    
T  19931535 catttactttgagaacgagcaaaaccatttagataaagagcagaatt 19931489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 33839473 - 33839519
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||||||||||| ||  ||||||| ||||||||||||||    
T  33839473 catttactttgagaatgagcgaatccatttggataaagagcagaatt 33839519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 41957597 - 41957643
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  41957597 catttactttgggaatgatcaaaatcgtttgggtaaagagcaaaatt 41957643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 42548212 - 42548162
Alignment:
Q  121 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||| ||||||||| ||||||||||||  |||||||||| ||||||||||    
T  42548212 tggacttttactttgggaatgagcaaaacgatttgggtaatgagcagaatt 42548162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 25428796 - 25428732
Alignment:
Q  107 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||| |||| | |||| |||||||||| ||||||||| || | ||||||||||||||| ||||    
T  25428796 acgcaggggcattttggatatttactttgggaatgagcagaaccgtttgggtaaagagcaaaatt 25428732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 28139448 - 28139512
Alignment:
Q  107 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||| |||| | ||| ||||||||||| ||||| |||||  |||||||||||| |||||||||    
T  28139448 acgcaggggcattttggtcatttactttgggaatgggcaaatccatttgggtaaaaagcagaatt 28139512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 31852700 - 31852636
Alignment:
Q  107 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||| || |||||| ||||||||||||| || |||||||| | ||||| ||| ||||||||||    
T  31852700 acgcaggggtaatatgaacatttactttgaaaacgagcaaaaccgtttggataatgagcagaatt 31852636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 35827 - 35777
Alignment:
Q  121 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  35827 tggacatttactttgagaatgagcaaaattgtttggttaaagagcagaatt 35777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 14153401 - 14153355
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  14153401 catttactttgggaatgagcaaaatcatttgggtaatgagcagaatt 14153355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 806594 - 806546
Alignment:
Q  123 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  806594 gacatttactttgagaatgagcaaaactgtttgggtaaagagcagaatt 806546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 2559640 - 2559696
Alignment:
Q  115 gcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||| |||||||||||| ||| |||||||||| ||||||||||||||| ||||    
T  2559640 gcaatatgaacatttactttgggaacgagcaaaatcgtttgggtaaagagcaaaatt 2559696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 1826590 - 1826636
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||||    
T  1826590 catttactttaaaaatgagcaaaatcatttggataaagagcagaatt 1826636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 1826176 - 1826136
Alignment:
Q  107 acgcagaggcaatatggacatttactttgagaatgagcaaa 147  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  1826176 acgcaaaggtaatatggacatttactttgagaatgagcaaa 1826136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 35060922 - 35060972
Alignment:
Q  121 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||||||  |||||||  |||||||||||||| ||||||||||    
T  35060922 tggacatttactttggaaatgagcggaatcatttgggtaatgagcagaatt 35060972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 6819611 - 6819668
Alignment:
Q  114 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||||||||| |||| ||| ||||||||   ||| ||||||||||||||||    
T  6819611 ggcaatatggacatttattttgggaacgagcaaaactgttttggtaaagagcagaatt 6819668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 17797025 - 17797087
Alignment:
Q  107 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 169  Q
    |||||| |||||||||||||||||||||| |||  ||||||||  ||||||||||||||||||    
T  17797025 acgcaggggcaatatggacatttactttgggaacaagcaaaattgtttgggtaaagagcagaa 17797087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 9539093 - 9539153
Alignment:
Q  109 gcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 169  Q
    |||| ||||||||| |||||||||||| |||||||||||||  ||| ||||||||||||||    
T  9539093 gcaggggcaatatgaacatttactttgggaatgagcaaaatagttttggtaaagagcagaa 9539153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 25389881 - 25389927
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||    
T  25389881 catttactttgagaatgagcaaatccatttgagtaaagagcagaatt 25389927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 28360221 - 28360259
Alignment:
Q  133 ttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  28360221 ttgagaatgagcaaaaacatttgggtaaagagcagaatt 28360259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 31133228 - 31133180
Alignment:
Q  123 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||| | ||||||| |||| |||||||||||||||||||||    
T  31133228 gacatttactttaaaaatgagcgaaatgatttgggtaaagagcagaatt 31133180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 38147085 - 38147144
Alignment:
Q  107 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagca 166  Q
    ||||||||| |||||| |||||||||||  |||||||| ||  |||||||||||||||||    
T  38147085 acgcagaggtaatatgaacatttactttaggaatgagcgaatccatttgggtaaagagca 38147144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 12965096 - 12965050
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||| |||||||| || | ||||||||||||||||||||    
T  12965096 catttactttgaaaatgagcagaaacgtttgggtaaagagcagaatt 12965050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 22788016 - 22788062
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||| |||||| ||||  ||||||||||||||||||||||    
T  22788016 catttactttgggaatgaacaaatccatttgggtaaagagcagaatt 22788062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 20685051 - 20685007
Alignment:
Q  127 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||||||||||  || ||||||||||| ||||||||||    
T  20685051 tttactttgagaatgagcggaaccatttgggtaatgagcagaatt 20685007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 33164532 - 33164582
Alignment:
Q  121 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||||||||||||||||  || ||||||||||| ||||||||||    
T  33164532 tggacatttactttgagaatgagcggaaccatttgggtaatgagcagaatt 33164582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 38677694 - 38677739
Alignment:
Q  126 atttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||| |||||| ||||||| ||||||||||||||||||||    
T  38677694 atttactttgggaatgaacaaaatcgtttgggtaaagagcagaatt 38677739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 28796671 - 28796621
Alignment:
Q  121 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||||||||||||||| | ||  ||||||||| ||||||||||    
T  28796671 tggacatttactttgagaatgagcgatattgtttgggtaatgagcagaatt 28796621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 36217921 - 36217871
Alignment:
Q  121 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||| ||||||||| ||||||| |||| |||||| |||||||||||||||    
T  36217921 tggacttttactttgggaatgagtaaaaccatttgagtaaagagcagaatt 36217871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 37576598 - 37576544
Alignment:
Q  117 aatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||||||||||  || |||||||| | ||||||||| ||||||||||    
T  37576598 aatatggacatttactttggaaacgagcaaaaccgtttgggtaatgagcagaatt 37576544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 54208227 - 54208181
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  54208227 catttactttgggaatgagcaaaaccatttggataaagagcataatt 54208181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 160
Target Start/End: Complemental strand, 37030954 - 37030921
Alignment:
Q  127 tttactttgagaatgagcaaaatcatttgggtaa 160  Q
    ||||||||| ||||||||||||||||||||||||    
T  37030954 tttactttgggaatgagcaaaatcatttgggtaa 37030921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 3792347 - 3792297
Alignment:
Q  121 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||| |||||||||||| | |||||||||||||| ||||||||||    
T  3792347 tggacatttattttgagaatgagtagaatcatttgggtaatgagcagaatt 3792297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 5602991 - 5602945
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||||    
T  5602991 catttactttgggaatgagcaaatccatttgggtaaagagcagaatt 5602945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 9862921 - 9862967
Alignment:
Q  123 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 169  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||    
T  9862921 gacatttattttgggaatgagcgaaatcatttgggtaaagagcagaa 9862967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 37260940 - 37260990
Alignment:
Q  121 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||| ||||    
T  37260940 tggacatttactttgagaatgggcaaaaccgtttgggtaaagagcataatt 37260990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 35392134 - 35392178
Alignment:
Q  124 acatttactttgagaatgagcaaaatcatttgggtaaagagcaga 168  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||    
T  35392134 acatttactttgggaatgagcaaaacaatttgggtaaagagcaga 35392178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 20447074 - 20447024
Alignment:
Q  121 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||||||||||||||||||||   |||||||||| |||| ||||    
T  20447074 tggacatttactttgagaatgagcaaaacagtttgggtaaaaagcataatt 20447024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 20532837 - 20532787
Alignment:
Q  121 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||||||||||||||||||||   |||||||||| |||| ||||    
T  20532837 tggacatttactttgagaatgagcaaaacagtttgggtaaaaagcataatt 20532787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 28476013 - 28476059
Alignment:
Q  125 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||||||||||||  || ||||||||||| ||||||||||    
T  28476013 catttactttgagaatgagcggaaccatttgggtaatgagcagaatt 28476059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 5119060 - 5119108
Alignment:
Q  123 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||||||  |||||||||||| | ||||| ||||||||||||||    
T  5119060 gacatttactttaggaatgagcaaaaccgtttggataaagagcagaatt 5119108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 42883173 - 42883109
Alignment:
Q  107 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||| | ||||||| |||||||||||  | ||||||||||   ||||||||||||||||||||    
T  42883173 acgcagggacaatatgaacatttactttaggtatgagcaaaactgtttgggtaaagagcagaatt 42883109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 3588558 - 3588622
Alignment:
Q  107 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||| |||| | ||| |||||| |||| ||||||||||| |||||||||||||||| ||||||    
T  3588558 acgcaggggcattttggtcatttaatttgggaatgagcaaattcatttgggtaaagagtagaatt 3588622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 9418632 - 9418588
Alignment:
Q  127 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||| |||||||| ||| ||||||||||| ||||||||||    
T  9418632 tttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 9418588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 3758977 - 3758923
Alignment:
Q  117 aatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||| |||||||||||| ||||||| |||| | ||| ||||||||||||||||    
T  3758977 aatatgaacatttactttgggaatgagtaaaaccgttttggtaaagagcagaatt 3758923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 38739436 - 38739388
Alignment:
Q  123 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||||| ||||||| |||  |||||||||||||||| ||||    
T  38739436 gacatttactttgacaatgagcgaaacgatttgggtaaagagcataatt 38739388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 397 - 441
Alignment:
Q  127 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    ||||||||| |||||||| ||| ||||||||||||||||| ||||    
T  397 tttactttgggaatgagcgaaaccatttgggtaaagagcataatt 441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 2886 - 2930
Alignment:
Q  127 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  2886 tttattttgagaatgagcgaaaccatttgggtaatgagcagaatt 2930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 23532 - 23488
Alignment:
Q  127 tttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 171  Q
    |||||||||||||||||||||| ||||||  ||| ||||||||||    
T  23532 tttactttgagaatgagcaaaaccatttgaataatgagcagaatt 23488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University