View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1588_low_10 (Length: 209)
Name: NF1588_low_10
Description: NF1588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1588_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 2933815 - 2934004
Alignment:
| Q |
1 |
agaagatccttgatattcatgaaaaaatatgagttcctatacctaaagtaaaattaacctctcaagctcaagggtataagagttgtaaatgcaagataaa |
100 |
Q |
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| T |
2933815 |
agaagatctttgatattcatgaaaaaatatgagttcctatacctaaagtaaaattaacctctcaagctcaagggtataagagttgtaaatgcaagataaa |
2933914 |
T |
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| Q |
101 |
cattttaatattatcaaggtcactattacaatgtagtgcacacatattatataacgtaatcacaaggttcaatcctagcttatactaagc |
190 |
Q |
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| T |
2933915 |
cattttaatattatcaaggtcactattacaatgtagtgcacacatattatataactcaatcacaaggttcaatcctagcttatactaagc |
2934004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 2919122 - 2919214
Alignment:
| Q |
98 |
aaacattttaatattatcaaggtcactattacaatgtagtgcacacatattatataacgtaatcacaaggttcaatcctagcttatactaagc |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
2919122 |
aaacattttaatattatcaaggtcactattacaatgtagtgcacacatattatataactcaagcacaaggttcaatcctagcttatactaagc |
2919214 |
T |
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