View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1588_low_3 (Length: 309)
Name: NF1588_low_3
Description: NF1588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1588_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 27638049 - 27637949
Alignment:
| Q |
104 |
gtatcagaataatcaaataaaattcatgttacaacaccatacagagcaacaagtggctacatttagaagtatggaaatttattcacagcaaattataaca |
203 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
27638049 |
gtattagaatgatcaaataaaattcatgttacaacaacatacagagcaacaagtggctacatttagaagtatggaaatttattcacaacaaattctaaca |
27637950 |
T |
|
| Q |
204 |
a |
204 |
Q |
| |
|
| |
|
|
| T |
27637949 |
a |
27637949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 37354242 - 37354142
Alignment:
| Q |
104 |
gtatcagaataatcaaataaaattcatgttacaacaccatacagagcaacaagtggctacatttagaagtatggaaatttattcacagcaaattataaca |
203 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||| || |||||| ||||| |
|
|
| T |
37354242 |
gtatcagaatgatcaaacgaaattcatgttacaacatcatacagagctacaagtggctatatttagaagcatggaaatttattcgcaacaaattctaaca |
37354143 |
T |
|
| Q |
204 |
a |
204 |
Q |
| |
|
| |
|
|
| T |
37354142 |
a |
37354142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 37366216 - 37366116
Alignment:
| Q |
104 |
gtatcagaataatcaaataaaattcatgttacaacaccatacagagcaacaagtggctacatttagaagtatggaaatttattcacagcaaattataaca |
203 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||| || |||||| ||||| |
|
|
| T |
37366216 |
gtatcagaatgatcaaacgaaattcatgttacaacatcatacagagctacaagtggctatatttagaagcatggaaatttattcgcaacaaattctaaca |
37366117 |
T |
|
| Q |
204 |
a |
204 |
Q |
| |
|
| |
|
|
| T |
37366116 |
a |
37366116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University