View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1588_low_6 (Length: 250)
Name: NF1588_low_6
Description: NF1588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1588_low_6 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 240796 - 240553
Alignment:
| Q |
7 |
tcgaagaatatggggtgttggatgatttatttcacatgggatagctgacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattg |
106 |
Q |
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| T |
240796 |
tcgaaaaatatggggtgttggatgatttatttcacatgggatagctgacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattg |
240697 |
T |
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| Q |
107 |
caatcttccgagtctcagttttggtaaaattttagcaccttagttaaatagagacataaaatagaacaatacagcaaattccatgtgtgaagccgataag |
206 |
Q |
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| T |
240696 |
caatcttccgagtctcagttttggtaaaattttagcaccttagttaaatagagacataaaatagaacaatacagcaaattccatgtgtgaagccgataag |
240597 |
T |
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| Q |
207 |
agtgtaacacctaaatttgaaagcaaagtaaaatggatttaatt |
250 |
Q |
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| T |
240596 |
agtgtaacacctaaatgtgaaagcaaagtaaaatggatttaatt |
240553 |
T |
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