View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15891_high_4 (Length: 329)
Name: NF15891_high_4
Description: NF15891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15891_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 37752633 - 37752944
Alignment:
| Q |
1 |
ttagggtacaattataaatgacaagtgttgaaatagaaagaaagaggaaattggaatatgatattaagagcttgtggagaacttatgcttctaatgaagg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37752633 |
ttagggtacaattataaatcacaagtgttgaaatagaaagaaagaggaaattggaatatgatattaagagcttgtggagaacttatgcttctaatgaagg |
37752732 |
T |
|
| Q |
101 |
gtatttatagccaaagaggggatatgatattatgattaatcaactttggttatagtttatattaattgtcacttaaattaatattgatagaaaggagagg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37752733 |
gtatttatagccagagaggggatatgatattatgattaatcaactttggttatagtttatattaattgtcacttaaattaatattgatagaaaggagagg |
37752832 |
T |
|
| Q |
201 |
aggtggtgaagagagcactatctactagttggtggcaattttcttaattaataactttggttcacctgttaaaaattcgtaacctaaaagtggatccaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37752833 |
aggtggtgaagagagcactatctactagttggtggcaattttcttaattaataactttggttcaccggttaaaaattcgtaacctaaaagtggatccaaa |
37752932 |
T |
|
| Q |
301 |
tctcatatgttc |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37752933 |
tctcatatgttc |
37752944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 37742085 - 37741982
Alignment:
| Q |
1 |
ttagggtacaattataaatgacaagtgttgaaatagaaagaaagaggaaattggaatatgatattaagagcttgtggagaacttatgcttctaatgaagg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
37742085 |
ttagggtacaattataaat--caagtgttgaaatataa-----gaggaaattggaatatgatattaagagcttgtggagaactcatgcttctaatcaagt |
37741993 |
T |
|
| Q |
101 |
gtatttatagc |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
37741992 |
gtatttatagc |
37741982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 37749155 - 37749043
Alignment:
| Q |
1 |
ttagggtacaattataaatgacaagtgttgaaatagaaagaaagaggaaattggaatatgatattaagagcttgtggagaacttatgcttctaatgaagg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37749155 |
ttagggtacaattataaat--caagtgttgaaatataa-----gaggaaattggaatatgatattaagagcttgtggagaactcatgcttctaatgaact |
37749063 |
T |
|
| Q |
101 |
gtatttatagccaaagaggg |
120 |
Q |
| |
|
|||||||||| | |||||| |
|
|
| T |
37749062 |
atatttatagctagagaggg |
37749043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 37741926 - 37741845
Alignment:
| Q |
168 |
gtcacttaaattaatattgatagaaaggagaggaggtggtgaagagagcactatctactagttggtggcaattttcttaattaa |
251 |
Q |
| |
|
||||| |||||| ||||||||| |||| |||||||| |||| ||| |||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
37741926 |
gtcacataaattcatattgata--aaggggaggaggtagtgaggagggcaccatctacaagttggtgacaattttcttaattaa |
37741845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University