View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15891_high_5 (Length: 328)
Name: NF15891_high_5
Description: NF15891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15891_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 24503329 - 24503021
Alignment:
| Q |
9 |
gaacaaaattgtgcgattaaaaataggggaaacaaaattgcagttttagtagtataagaagacaagtgcattgaaaccttttaagaaaatatttcatgga |
108 |
Q |
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| T |
24503329 |
gaacaaaattgtgcgattagaaataggggaa-caatattgcagttttactagtataagaagacaagtgcattgaaaccttttaagaaaatatttcatgga |
24503231 |
T |
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| Q |
109 |
ttcaatatttatacttcaccttgatagagaaaaagataaagaaagtgatgtgatttatatgataggttggtgtccaattttagttcattaaaattgata- |
207 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
24503230 |
ttcaatatttatacttcaccttaatagagaaagagataaagaaagtgatgtgatttatatgataggttggtgtccaattttaattcattagaattgatac |
24503131 |
T |
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| Q |
208 |
---catataagaaagtaagcaaactaagcaactcacggtttagcaaagttggcaactcaaaatgttaattgtgtgtggattgaagaatcaccaacttata |
304 |
Q |
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| T |
24503130 |
atacatataag-aagtaagcaaattaagcaactcacggtttagcaaagtttgtaactcaaaatgttaattgtgtgtggattgaagaatcaccaacttata |
24503032 |
T |
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| Q |
305 |
ttgcagtagtt |
315 |
Q |
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| T |
24503031 |
ttgcaatagtt |
24503021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 308
Target Start/End: Complemental strand, 40034223 - 40034099
Alignment:
| Q |
184 |
aattttagttcattaaaattgatacatataagaaagtaagcaaactaagcaactcacggtttagcaaagttggcaactcaaaatgttaattgtgtgtgga |
283 |
Q |
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| T |
40034223 |
aattttaattcattagaattagtacatataagaagggtagcaaaccaaactgctcactatttaacaaagtttgcaactcaaaatgatgattgtgtatgga |
40034124 |
T |
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| Q |
284 |
ttgaagaatcaccaacttatattgc |
308 |
Q |
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| T |
40034123 |
ttgaagaatcaccaccttatattgc |
40034099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 7436320 - 7436262
Alignment:
| Q |
249 |
aaagttggcaactcaaaatgttaattgtgtgtggattgaagaatcaccaacttatattg |
307 |
Q |
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|||||| |||||||||||||||||||| ||||| ||||| |||||||| ||| ||||| |
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| T |
7436320 |
aaagtttgcaactcaaaatgttaattgggtgtgaattgagaaatcaccaccttgtattg |
7436262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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