View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15891_low_7 (Length: 270)

Name: NF15891_low_7
Description: NF15891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15891_low_7
NF15891_low_7
[»] chr1 (10 HSPs)
chr1 (1-253)||(7274485-7274737)
chr1 (105-219)||(32359125-32359239)
chr1 (94-193)||(21516699-21516798)
chr1 (121-231)||(32602758-32602868)
chr1 (105-231)||(20791972-20792096)
chr1 (100-231)||(37131512-37131645)
chr1 (100-219)||(42747545-42747664)
chr1 (107-180)||(2774200-2774273)
chr1 (96-172)||(1788776-1788852)
chr1 (94-134)||(7781254-7781294)
[»] chr4 (11 HSPs)
chr4 (90-231)||(52831383-52831524)
chr4 (94-231)||(24418246-24418383)
chr4 (100-231)||(24474040-24474171)
chr4 (146-231)||(31736149-31736234)
chr4 (111-230)||(39276304-39276423)
chr4 (109-231)||(17425685-17425807)
chr4 (97-231)||(52986480-52986610)
chr4 (125-225)||(55723237-55723336)
chr4 (151-188)||(2733436-2733473)
chr4 (94-134)||(20717762-20717802)
chr4 (105-133)||(47789588-47789616)
[»] chr8 (9 HSPs)
chr8 (105-231)||(28444783-28444909)
chr8 (94-230)||(25019634-25019770)
chr8 (105-231)||(41470029-41470155)
chr8 (104-217)||(13544129-13544242)
chr8 (104-217)||(13680231-13680344)
chr8 (105-180)||(12525312-12525386)
chr8 (128-219)||(13895977-13896068)
chr8 (127-231)||(18892296-18892400)
chr8 (94-134)||(43276876-43276916)
[»] chr7 (4 HSPs)
chr7 (95-227)||(883674-883806)
chr7 (95-227)||(1243003-1243135)
chr7 (109-219)||(18654709-18654819)
chr7 (146-227)||(25659427-25659508)
[»] chr5 (6 HSPs)
chr5 (94-229)||(9004754-9004888)
chr5 (97-228)||(34639938-34640069)
chr5 (121-237)||(34639744-34639860)
chr5 (65-171)||(18336339-18336445)
chr5 (105-142)||(11653827-11653864)
chr5 (105-233)||(32882664-32882792)
[»] chr3 (6 HSPs)
chr3 (109-230)||(37334442-37334563)
chr3 (105-231)||(32645689-32645814)
chr3 (121-231)||(43822487-43822597)
chr3 (202-231)||(11042009-11042038)
chr3 (94-134)||(42217665-42217705)
chr3 (94-134)||(44947311-44947351)
[»] chr2 (5 HSPs)
chr2 (109-231)||(31062890-31063013)
chr2 (105-227)||(40909856-40909978)
chr2 (106-157)||(5946261-5946312)
chr2 (106-227)||(44984345-44984466)
chr2 (153-226)||(4237754-4237827)
[»] chr6 (1 HSPs)
chr6 (105-226)||(5976574-5976694)
[»] scaffold0040 (1 HSPs)
scaffold0040 (160-231)||(49907-49978)
[»] scaffold0009 (1 HSPs)
scaffold0009 (94-134)||(192014-192054)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 7274485 - 7274737
Alignment:
Q  1 taacgagataattgttgtttacatgaagcgatgcaacaacaattaactagtctaacttagtgcgtgttcggtaagagaaaaagttgagctatggcttata 100  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7274485 taacgagataattgttgtttacatgaagcgatacaacaacaactaactagtctaacttagtgtgtgttcggtaagagaaaaagttgagctatggcttata 7274584  T
Q  101 gctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7274585 gctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttaaacgagcttataacttattttcatgagctcatagtggcctc 7274684  T
Q  201 tgataagctaattcaagtagtttatagcttacaacttatcaaacactacaaat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7274685 tgataagctaattcaagtagtttatagcttacaacttatcaaacactacaaat 7274737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 32359125 - 32359239
Alignment:
Q  105 atagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgat 204  Q
    |||||||||||||||||||||||||||||||   |||||  |||| ||||||||||||||||||||| |||||||||||||||| | || |   | ||||    
T  32359125 atagcttataagctcgtatgattaaaaaagatccgtttcgcaactgtcatttttacacgagcttatagcttattttcatgagcttacagcgatttttgat 32359224  T
Q  205 aagctaattcaagta 219  Q
    |||||||||||||||    
T  32359225 aagctaattcaagta 32359239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 21516798 - 21516699
Alignment:
Q  94 gcttatagctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatag 193  Q
    |||||| ||| ||||||||||||||||||||| |||||||||| |||||  ||| | |||||||| ||||||||||||||||| ||| ||||||| ||||    
T  21516798 gcttatggcttatagcttataagctcgtatgactaaaaaagacatgtttggtaattgtcattttttcacgagcttataacttaatttgatgagcttatag 21516699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 32602758 - 32602868
Alignment:
Q  121 tatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgataagctaattcaagtag 220  Q
    ||||||||||||||| ||||||  ||||||||| |||||||||||||||||  ||||||||||| | | |||  ||  | |||||||||||||||| |||    
T  32602758 tatgattaaaaaagatttgtttgctaactatcagttttacacgagcttatagtttattttcatgtgtttataaaggtatttgataagctaattcaaatag 32602857  T
Q  221 tttatagctta 231  Q
     ||||||||||    
T  32602858 cttatagctta 32602868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 20792096 - 20791972
Alignment:
Q  105 atagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgat 204  Q
    |||| ||||||||| |||| ||| |||| ||| ||||| |||||| | ||||| |||||| |||| | |||||||| ||||| |||||||||  | ||||    
T  20792096 atagtttataagctggtataattgaaaa-gacctgtttgataactgttatttt-acacgaccttacatcttatttttatgagttcatagtggtttttgat 20791999  T
Q  205 aagctaattcaagtagtttatagctta 231  Q
    |||||||||||||||| ||||||||||    
T  20791998 aagctaattcaagtagcttatagctta 20791972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 231
Target Start/End: Complemental strand, 37131645 - 37131512
Alignment:
Q  100 agctcatagcttataagctcgtatga--ttaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggc 197  Q
    ||||||||||||||||| ||||||||  |||||||||||  ||||  || |||||||  | ||||||||||| | ||||||||||||| || | |   ||    
T  37131645 agctcatagcttataagttcgtatgattttaaaaaagacccgtttggtagctatcataatcacacgagcttagaccttattttcatgaacttacaacagc 37131546  T
Q  198 ctctgataagctaattcaagtagtttatagctta 231  Q
     | |||||||||||||||||||| ||||||||||    
T  37131545 ttttgataagctaattcaagtagcttatagctta 37131512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 42747545 - 42747664
Alignment:
Q  100 agctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcct 199  Q
    |||| ||||||||||||||||||||||||||| ||||   ||   ||||| ||||||   ||| |||||||| |||| ||| ||||||| ||||||   |    
T  42747545 agcttatagcttataagctcgtatgattaaaatagacccattaagtaactgtcatttactcacaagcttatagcttaattttatgagcttatagtgtttt 42747644  T
Q  200 ctgataagctaattcaagta 219  Q
     | |||||||||||||||||    
T  42747645 tttataagctaattcaagta 42747664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 2774200 - 2774273
Alignment:
Q  107 agcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttatttt 180  Q
    ||||||||||||| ||||| |||||||||||  |||  ||||  || ||||| || ||||||||||||||||||    
T  2774200 agcttataagctcatatgactaaaaaagactcatttggtaaccgtctttttttcatgagcttataacttatttt 2774273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 1788776 - 1788852
Alignment:
Q  96 ttatagctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataa 172  Q
    |||||||| | |||||||||| | ||||||   |||||||||||||| ||||| | | ||| |||||||||||||||    
T  1788776 ttatagcttacagcttataagtttgtatgacataaaaagacttgtttgataacaaccttttctacacgagcttataa 1788852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 7781294 - 7781254
Alignment:
Q  94 gcttatagctcatagcttataagctcgtatgattaaaaaag 134  Q
    |||||||||| ||||||||||||||||| |||| |||||||    
T  7781294 gcttatagcttatagcttataagctcgtttgataaaaaaag 7781254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 52831383 - 52831524
Alignment:
Q  90 tatggcttatagctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctc 189  Q
    |||||||||||| | ||||||||||||||| ||||||||||||| ||||||||  ||||  |||||||||||||||||| || ||||||||||||||||     
T  52831383 tatggcttatagtttatagcttataagctcatatgattaaaaaaaacttgtttggtaacggtcatttttacacgagcttgtagcttattttcatgagctt 52831482  T
Q  190 atagtggcctctgataagctaattcaagtagtttatagctta 231  Q
    |||  ||  | |||||||||||||||||||| ||||||||||    
T  52831483 ataaaggtttttgataagctaattcaagtagcttatagctta 52831524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 231
Target Start/End: Complemental strand, 24418383 - 24418246
Alignment:
Q  94 gcttatagctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatag 193  Q
    |||||| ||| ||| ||||| ||||| ||||||||||| |||| |||||  ||| | |||||||||||| |||||||| ||||||||| |||||| ||||    
T  24418383 gcttatggcttataccttatcagctcatatgattaaaagagacctgtttgctaattgtcatttttacacaagcttatatcttattttcttgagcttatag 24418284  T
Q  194 tggcctctgataagctaattcaagtagtttatagctta 231  Q
     ||  | |||||||||||||||||||| ||||||||||    
T  24418283 cggtttttgataagctaattcaagtagcttatagctta 24418246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 100 - 231
Target Start/End: Original strand, 24474040 - 24474171
Alignment:
Q  100 agctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcct 199  Q
    |||| ||||||||||||||| |||||||||||||||| |||||   || |||||  ||| |||| ||||||| |||||||||||||| | |||| ||  |    
T  24474040 agcttatagcttataagctcatatgattaaaaaagacctgtttggcaattatcagctttgcacgggcttatatcttattttcatgagtttatagcggttt 24474139  T
Q  200 ctgataagctaattcaagtagtttatagctta 231  Q
     | |||||||||||||||||| ||||||||||    
T  24474140 tttataagctaattcaagtagcttatagctta 24474171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 31736234 - 31736149
Alignment:
Q  146 aactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgataagctaattcaagtagtttatagctta 231  Q
    |||||||||| |||||| | ||||||||||||||||||||||| |||  |   | | |||||||||||||||||||||||||||||    
T  31736234 aactatcattgttacacaaacttataacttattttcatgagcttataacgattttttataagctaattcaagtagtttatagctta 31736149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 39276304 - 39276423
Alignment:
Q  111 tataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgataagcta 210  Q
    ||||||||| ||||| |||||| |||| |||| |||||| |||||||  ||||||||||||||||||||| |  |||| |||  |   | ||||||||||    
T  39276304 tataagctcatatgactaaaaatgactcgtttgataactgtcattttctcacgagcttataacttatttttactagcttataacgttttttgataagcta 39276403  T
Q  211 attcaagtagtttatagctt 230  Q
    |||||||||| ||| |||||    
T  39276404 attcaagtagcttaaagctt 39276423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 17425807 - 17425685
Alignment:
Q  109 cttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgataagc 208  Q
    |||| |||| ||||||||||||||| ||||||||  |||||  |||||| ||||||||||||| | ||||||| |||||| |||| ||    | ||||||    
T  17425807 cttaaaagcccgtatgattaaaaaatacttgtttggtaactgccattttaacacgagcttatagcgtattttcttgagcttatagcggttattaataagc 17425708  T
Q  209 taattcaagtagtttatagctta 231  Q
    ||| ||||||||  |||||||||    
T  17425707 taactcaagtagcctatagctta 17425685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 231
Target Start/End: Complemental strand, 52986610 - 52986480
Alignment:
Q  97 tatagctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtgg 196  Q
    ||||||| ||||||||||||    | |||||| || ||| |||||| |||| | ||||||||||||||| |||||||||  ||||||||| | |||   |    
T  52986610 tatagcttatagcttataag----tgtgattataagagatttgtttgataattgtcatttttacacgagtttataactttatttcatgagattataacag 52986515  T
Q  197 cctctgataagctaattcaagtagtttatagctta 231  Q
      | |||||||||| ||||||||||||||||||||    
T  52986514 tttttgataagctagttcaagtagtttatagctta 52986480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 55723336 - 55723237
Alignment:
Q  125 attaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgataagctaattcaagtagttta 224  Q
    ||||||||||||| |||| ||||  || |||||| |||||||||| | |||| ||| ||||| | |||| ||  | ||||||||||||||||||||||||    
T  55723336 attaaaaaagactcgtttgataataat-attttttcacgagcttaaagcttaattttatgagattatagcggtatgtgataagctaattcaagtagttta 55723238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 2733473 - 2733436
Alignment:
Q  151 tcatttttacacgagcttataacttattttcatgagct 188  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  2733473 tcatttttacaccagcttataacttattttaatgagct 2733436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 20717762 - 20717802
Alignment:
Q  94 gcttatagctcatagcttataagctcgtatgattaaaaaag 134  Q
    |||||||||| ||| ||||||||||||||||| ||||||||    
T  20717762 gcttatagcttataacttataagctcgtatgactaaaaaag 20717802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 47789616 - 47789588
Alignment:
Q  105 atagcttataagctcgtatgattaaaaaa 133  Q
    |||||||||||||||||||||||||||||    
T  47789616 atagcttataagctcgtatgattaaaaaa 47789588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 28444909 - 28444783
Alignment:
Q  105 atagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgat 204  Q
    ||||||||||||||||||||||||||||| || |||||  ||||| ||||||||||| ||||||||| |||||||| ||||||| | || ||  | ||||    
T  28444909 atagcttataagctcgtatgattaaaaaatacctgtttggtaactctcatttttacaagagcttatagcttatttttatgagcttagagagggttttgat 28444810  T
Q  205 aagctaattcaagtagtttatagctta 231  Q
    ||||||||| |||||| ||||||||||    
T  28444809 aagctaatttaagtagcttatagctta 28444783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 230
Target Start/End: Complemental strand, 25019770 - 25019634
Alignment:
Q  94 gcttatagctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatag 193  Q
    ||||||| ||||||| || |||| | |||||||||||||| | ||||||  ||||| | ||||||| ||||| ||||||||| |||| ||||||| |||     
T  25019770 gcttataactcatagattgtaagattgtatgattaaaaaatatttgtttggtaactgttatttttaaacgagattataacttctttttatgagcttatat 25019671  T
Q  194 tggcctctgataagctaattcaagtagtttatagctt 230  Q
      || | |||||| ||||||||||||| |||||||||    
T  25019670 gagcttatgataatctaattcaagtagcttatagctt 25019634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 41470029 - 41470155
Alignment:
Q  105 atagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgat 204  Q
    ||||||||||||||| ||| | ||||||||||  ||||  ||||| |||||||  ||||||||||||||||| ||| |  |||||||||||   | | ||    
T  41470029 atagcttataagctcatataactaaaaaagacccgtttggtaactgtcattttctcacgagcttataacttaattttactagctcatagtgtttttttat 41470128  T
Q  205 aagctaattcaagtagtttatagctta 231  Q
    ||||||| |||||||| ||||||||||    
T  41470129 aagctaactcaagtagcttatagctta 41470155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 13544242 - 13544129
Alignment:
Q  104 catagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctga 203  Q
    |||||||||||||||||| |||||||||| ||| | | | |||| | | ||||||||||||| ||||| |||||||  ||||| | ||||| |  | |||    
T  13544242 catagcttataagctcgtgtgattaaaaacgacatctctgataaatgttatttttacacgagtttatagcttatttgtatgagtttatagtagtttgtga 13544143  T
Q  204 taagctaattcaag 217  Q
    ||||||||||||||    
T  13544142 taagctaattcaag 13544129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 13680231 - 13680344
Alignment:
Q  104 catagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctga 203  Q
    |||||||||||||||||| |||||||||| ||| | | | |||| | | ||||||||||||| ||||| |||||||  ||||| | ||||| |  | |||    
T  13680231 catagcttataagctcgtgtgattaaaaacgacatctctgataaatgttatttttacacgagtttatagcttatttgtatgagtttatagtagtttgtga 13680330  T
Q  204 taagctaattcaag 217  Q
    ||||||||||||||    
T  13680331 taagctaattcaag 13680344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 12525386 - 12525312
Alignment:
Q  105 atagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttatttt 180  Q
    ||||||||||| ||| ||||| || ||||||||||||| |||||| |||||||| || |||||| |||||||||||    
T  12525386 atagcttataa-ctcatatgagtacaaaagacttgtttgataactgtcattttttcatgagcttttaacttatttt 12525312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 13896068 - 13895977
Alignment:
Q  128 aaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgataagctaattcaagta 219  Q
    ||||||||| |||||  ||||| ||||| ||| | |||||||||||||||||||||||| | ||||| |  | ||||||| |||||||||||    
T  13896068 aaaaaagacatgtttgttaactgtcattattaaatgagcttataacttattttcatgagtttatagttgtttttgataagttaattcaagta 13895977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 18892400 - 18892296
Alignment:
Q  127 taaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgataagctaattcaagtagtttata 226  Q
    |||||||||| |||||| ||||  ||||||| ||||||||||  ||||||| || |  |||| |||| |   |||||||||||||||||||||| |||||    
T  18892400 taaaaaagacctgtttcgtaaccgtcattttcacacgagcttccaacttatatttactagcttatagcgctttctgataagctaattcaagtagcttata 18892301  T
Q  227 gctta 231  Q
     ||||    
T  18892300 tctta 18892296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 43276916 - 43276876
Alignment:
Q  94 gcttatagctcatagcttataagctcgtatgattaaaaaag 134  Q
    |||||||||| ||||||||||||||||| |||| |||||||    
T  43276916 gcttatagcttatagcttataagctcgtttgataaaaaaag 43276876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 883674 - 883806
Alignment:
Q  95 cttatagctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagt 194  Q
    ||||| ||| ||||| |||||||| |||||||| || ||||||  ||| ||||||  ||||||||||||||||||||||||||||||||||||  ||||     
T  883674 cttatggcttatagcatataagcttgtatgattgaacaagactcatttgataactgacatttttacacgagcttataacttattttcatgagcatataga 883773  T
Q  195 ggcctctgataagctaattcaagtagtttatag 227  Q
     |  ||||||||| |||||||||||||||||||    
T  883774 agtttctgataagttaattcaagtagtttatag 883806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 1243003 - 1243135
Alignment:
Q  95 cttatagctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagt 194  Q
    ||||| ||| ||||| |||||||| |||||||| || ||||||  ||| ||||||  ||||||||||||||||||||||||||||||||||||  ||||     
T  1243003 cttatggcttatagcatataagcttgtatgattgaacaagactcatttgataactgacatttttacacgagcttataacttattttcatgagcatataga 1243102  T
Q  195 ggcctctgataagctaattcaagtagtttatag 227  Q
     |  ||||||||| |||||||||||||||||||    
T  1243103 agtttctgataagttaattcaagtagtttatag 1243135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 18654819 - 18654709
Alignment:
Q  109 cttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgataagc 208  Q
    ||||||||||| | ||||||||||||| |  ||| |||||  |||||||  || ||| |||||  ||||||| ||||||| ||||| |  | ||||||||    
T  18654819 cttataagctcatttgattaaaaaagattcctttgataacggtcattttctcatgagtttatagattatttttatgagcttatagttgtttgtgataagc 18654720  T
Q  209 taattcaagta 219  Q
    |||||||||||    
T  18654719 taattcaagta 18654709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 25659427 - 25659508
Alignment:
Q  146 aactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgataagctaattcaagtagtttatag 227  Q
    |||| ||||||||| || | |||||| |||||||||||||||| | | |||  |  ||||||||||||||||||| ||||||    
T  25659427 aactttcatttttagacaaacttatagcttattttcatgagcttacaatggttttcgataagctaattcaagtagcttatag 25659508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 9004754 - 9004888
Alignment:
Q  94 gcttatagctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatag 193  Q
    |||||| ||| ||||||||||||| ||||||||||||||| |   ||||  | |||| || ||||||||||||||||| |||||||||||||||| |||     
T  9004754 gcttatggcttatagcttataagcccgtatgattaaaaaatatccgtttggttactaaca-ttttacacgagcttatagcttattttcatgagcttatat 9004852  T
Q  194 tggcctctgataagctaattcaagtagtttatagct 229  Q
     ||  | |||||||||||||||||||| ||||||||    
T  9004853 cggtttttgataagctaattcaagtagcttatagct 9004888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 34639938 - 34640069
Alignment:
Q  97 tatagctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtgg 196  Q
    ||||||| |||||||||||||| |||| || | ||||||| |||||  ||||| | | |||||||| |||||||| |||||||  ||||||| |||| ||    
T  34639938 tatagcttatagcttataagctggtattataataaaagacctgtttggtaactgttaattttacacaagcttatagcttatttctatgagcttatagcgg 34640037  T
Q  197 cctctgataagctaattcaagtagtttatagc 228  Q
      | | ||||||||||||||||||||||||||    
T  34640038 tttataataagctaattcaagtagtttatagc 34640069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 34639744 - 34639860
Alignment:
Q  121 tatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgataagctaattcaagtag 220  Q
    |||||||||||||||| |||||| |||| ||||||||  ||| |||||||||||| |||| |  |  | ||||   | | ||||||||||||||||||||    
T  34639744 tatgattaaaaaagacctgtttcgtaacaatcattttctcaccagcttataacttttttttagtatgttatagcatcttttgataagctaattcaagtag 34639843  T
Q  221 tttatagcttacaactt 237  Q
     |||||||||| |||||    
T  34639844 cttatagcttaaaactt 34639860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 18336339 - 18336445
Alignment:
Q  65 tgttcggtaagagaaaaagttgagct-atggcttatagctcatagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacg 163  Q
    |||| ||||||| | ||| ||||||| ||||||| || || ||||| ||||||||||||||||| |||||||| |||||  ||||| | ||||||||| |    
T  18336339 tgtttggtaagacataaaattgagcttatggcttgtacctaatagcatataagctcgtatgatt-aaaaagacctgtttggtaactgttatttttacatg 18336437  T
Q  164 agcttata 171  Q
     |||||||    
T  18336438 tgcttata 18336445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 11653864 - 11653827
Alignment:
Q  105 atagcttataagctcgtatgattaaaaaagacttgttt 142  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  11653864 atagcttataatctcgtatgattaaaaaagacctgttt 11653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 233
Target Start/End: Original strand, 32882664 - 32882792
Alignment:
Q  105 atagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgat 204  Q
    ||||||| |||| || | ||| ||||| ||||| ||||  ||| | |||||||  |||||||||||| ||||||||  |||||| ||| ||   | ||||    
T  32882664 atagcttttaagttcttctgactaaaagagactcgtttggtaattgtcattttctcacgagcttatagcttatttttttgagcttataatgttttttgat 32882763  T
Q  205 aagctaattcaagtagtttatagcttaca 233  Q
    || ||||||||||||| ||| ||||||||    
T  32882764 aaactaattcaagtagcttaaagcttaca 32882792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 230
Target Start/End: Original strand, 37334442 - 37334563
Alignment:
Q  109 cttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgataagc 208  Q
    |||||||||| |||||||||||||||||  |||| |||||| ||||||||||||||| ||||| |  ||||||||||||| ||| |||  | | ||||||    
T  37334442 cttataagcttgtatgattaaaaaagaccggtttgataactgtcatttttacacgagtttatagcagattttcatgagcttataatggtttattataagc 37334541  T
Q  209 taattcaagtagtttatagctt 230  Q
    ||| ||| |||| |||||||||    
T  37334542 taactcacgtagcttatagctt 37334563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 32645689 - 32645814
Alignment:
Q  105 atagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgat 204  Q
    |||| |||||||||||| ||||||||||||| ||||||  ||| | |||||||||||||||||||||  ||||||| ||||||| |||| ||  | ||||    
T  32645689 atagtttataagctcgtgtgattaaaaaagagttgtttagtaattgtcatttttacacgagcttatagtttattttaatgagcttatagcgg-ttttgat 32645787  T
Q  205 aagctaattcaagtagtttatagctta 231  Q
    ||| ||| |||||||| ||| ||||||    
T  32645788 aagttaagtcaagtagcttaaagctta 32645814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 43822487 - 43822597
Alignment:
Q  121 tatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgataagctaattcaagtag 220  Q
    |||||||||||||||   ||||  ||| | |||||||||||| |||||||| |||||||||||||| | |||||||  | ||||||||||||||||||||    
T  43822487 tatgattaaaaaagatccgtttggtaattgtcatttttacacaagcttatagcttattttcatgagattatagtggtttttgataagctaattcaagtag 43822586  T
Q  221 tttatagctta 231  Q
     ||| ||||||    
T  43822587 cttaaagctta 43822597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 11042009 - 11042038
Alignment:
Q  202 gataagctaattcaagtagtttatagctta 231  Q
    ||||||||||||||||||||||||||||||    
T  11042009 gataagctaattcaagtagtttatagctta 11042038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 42217665 - 42217705
Alignment:
Q  94 gcttatagctcatagcttataagctcgtatgattaaaaaag 134  Q
    |||||||||| ||||||||||||||||| |||| |||||||    
T  42217665 gcttatagcttatagcttataagctcgtttgataaaaaaag 42217705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 44947351 - 44947311
Alignment:
Q  94 gcttatagctcatagcttataagctcgtatgattaaaaaag 134  Q
    |||||||||| ||||||||||||||||| |||| |||||||    
T  44947351 gcttatagcttatagcttataagctcgtttgataaaaaaag 44947311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 31062890 - 31063013
Alignment:
Q  109 cttataagctcgtatgattaaaaaa-gacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgataag 207  Q
    ||||||||| | ||||||||||||| || ||||||  |||||  | |||||| |||||||||||||||||||||| ||||| |||| ||  | |||||||    
T  31062890 cttataagcccatatgattaaaaaaagaattgtttggtaacttccgtttttatacgagcttataacttattttcaagagcttatagcggtttttgataag 31062989  T
Q  208 ctaattcaagtagtttatagctta 231  Q
    ||| ||||||||| ||||||||||    
T  31062990 ctatttcaagtagcttatagctta 31063013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 40909856 - 40909978
Alignment:
Q  105 atagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgat 204  Q
    |||||||||||||| |||||||||||||| ||  ||||  ||||| |||| |  | || ||||||||||||||||||||||||| |||  |   | ||||    
T  40909856 atagcttataagcttgtatgattaaaaaataccagtttggtaactgtcatctgaagacaagcttataacttattttcatgagcttataacgttttttgat 40909955  T
Q  205 aagctaattcaagtagtttatag 227  Q
    |||||||||||||||||||||||    
T  40909956 aagctaattcaagtagtttatag 40909978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 5946261 - 5946312
Alignment:
Q  106 tagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttt 157  Q
    |||||||||||||||||||| ||||||||||||||||  |||||||||||||    
T  5946261 tagcttataagctcgtatgactaaaaaagacttgtttggtaactatcatttt 5946312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 44984466 - 44984345
Alignment:
Q  106 tagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgata 205  Q
    ||||||||||||| |||||||||||||| ||  ||||  ||||| |||| |  | || ||||||||||||||||||| ||||| |||  |   | |||||    
T  44984466 tagcttataagcttgtatgattaaaaaataccagtttggtaactgtcatctgaagacaagcttataacttattttcacgagcttataacgttttttgata 44984367  T
Q  206 agctaattcaagtagtttatag 227  Q
    ||||||||||||||| ||||||    
T  44984366 agctaattcaagtagcttatag 44984345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 4237827 - 4237754
Alignment:
Q  153 atttttacacgagcttataacttattttcatgagctcatagtggcctctgataagctaattcaagtagtttata 226  Q
    ||||||| | || ||||||||||||||| ||||  | ||||||  || ||||||| ||||||||||||||||||    
T  4237827 atttttatatgaacttataacttatttttatgaatttatagtgatctgtgataagttaattcaagtagtttata 4237754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 5976574 - 5976694
Alignment:
Q  105 atagcttataagctcgtatgattaaaaaagacttgtttcataactatcatttttacacgagcttataacttattttcatgagctcatagtggcctctgat 204  Q
    |||||||||||| | |||||||||||||||||   |||  ||||| |||||| ||||||| ||| ||||||||||||| ||| | |||| |  || ||||    
T  5976574 atagcttataagtttgtatgattaaaaaagacacatttggtaactgtcatttgtacacgaacttctaacttattttcaggagtttatagcgatctttgat 5976673  T
Q  205 aagctaattcaagtagtttata 226  Q
    ||||| |||| |||||||||||    
T  5976674 aagct-attcgagtagtttata 5976694  T

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Target: scaffold0040 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 49978 - 49907
Alignment:
Q  160 cacgagcttataacttattttcatgagctcatagtggcctctgataagctaattcaagtagtttatagctta 231  Q
    |||||||||||| |||||||| | ||||| |||| ||  | |||||||||||||||||||| ||||||||||    
T  49978 cacgagcttatagcttatttttaagagcttatagcggtttgtgataagctaattcaagtagcttatagctta 49907  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 192014 - 192054
Alignment:
Q  94 gcttatagctcatagcttataagctcgtatgattaaaaaag 134  Q
    |||||||||| |||||||||||||||||||||  |||||||    
T  192014 gcttatagcttatagcttataagctcgtatgacaaaaaaag 192054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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