View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15892_high_3 (Length: 423)
Name: NF15892_high_3
Description: NF15892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15892_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 6686038 - 6686456
Alignment:
| Q |
1 |
cacaagtcaagtttcagacatcgtccaacaccaacaaataccttgtaacgaagaagaagcaagtgttgttcgaatggttcttgttgatcatcgatatcat |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| |||||||| |
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| T |
6686038 |
cacaagtcaagtttcatacatcgtccaacaccaacaaataccttgtaacgaacaagaagcgagtgttgttcgaatggttctcgttgatcattgatatcat |
6686137 |
T |
|
| Q |
101 |
ctccaaataaagcttgtaagatttgcttcgcaaaagcttggacattgaatgagtaagaaacatgaaaccaaacttggttttcaaataagcctttgacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6686138 |
ctccaaataaagcttgtaagatttgcttcgcaaaagcttggatatcgaatgagtaagaaacatgaaaccaaacttggttttcaaataagcctttgacctt |
6686237 |
T |
|
| Q |
201 |
agcatcattgtacaccatttgagcaagagtggtcttgcctatatataccacaaagaccaacaatagcaacagaggaaataacattaacattggagtcttg |
300 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6686238 |
agcatcattgtacaccatttgagcaagagtagtcttgcctatatataccaccaagaccaacaatagcaacagaggaaataacattaacattggagtcttg |
6686337 |
T |
|
| Q |
301 |
ttcaagcagcatgcttaccatcttcattttctcatcagttctaccaataataatatgatcagattctaagcaattagaactggttgttatcggacgtaca |
400 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6686338 |
ttcaagcaacatgcttaccatcttcattttctcatcagttctaccaataataatatgatcagattctaagcaattagaactggttgttatcagacgtaca |
6686437 |
T |
|
| Q |
401 |
cagatctctgctcctcctc |
419 |
Q |
| |
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||||||| || |||||||| |
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| T |
6686438 |
cagatctttggtcctcctc |
6686456 |
T |
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