View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15892_low_1 (Length: 502)
Name: NF15892_low_1
Description: NF15892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15892_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 378
Target Start/End: Complemental strand, 22047272 - 22046907
Alignment:
| Q |
14 |
tgaaaactgctcaaagggtttaaacaaa-cacacagaaactttattatattacactctaaaatagtgtttggatttaaaccaaacactagagttcacata |
112 |
Q |
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| T |
22047272 |
tgaaaactgctcaaagggtttaaacaaaacacacagaaactttattatattacactctaaaatagtgtttggatttaaaccaaacactagagttcacata |
22047173 |
T |
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| Q |
113 |
aaacatacataatcttaaactagttattatcattaagttattatcatcactaaggggtaagacccatctctgcttcaaactcttcatttgcaagtgcatg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22047172 |
aaacatacataatcttaaactagttattatcattaagttattatcatcactaaggggtaagacccatttctgcttcaaactcttcatttgcaagtgcatg |
22047073 |
T |
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| Q |
213 |
ggttgcagttgcagtttggaccacatttgcagccatcattctcagcacccatttcagcagcaccctcaaattggggtttggcagattgaactcccatcac |
312 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||| |
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| T |
22047072 |
ggttgcagttgcagtttggaccacacttgcagccatcattctcagcacccatttcagcagcaccttcaaattgaggcttggcagatgcaactcccatcac |
22046973 |
T |
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| Q |
313 |
aagggtctcagaggtggttgattctgtgtagctcaagtcagggtacatcttgcagctgcatcacat |
378 |
Q |
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| T |
22046972 |
aagggtctcagaggtggttgattctgtgtagctcaagtcagggtacatcttgcagctgcatcacat |
22046907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 388 - 485
Target Start/End: Complemental strand, 22046868 - 22046775
Alignment:
| Q |
388 |
cataagagtgtgtgatttcatgattcctagaaatattttgctaaaaatttagaaattgaaacatatatagcaatgtttgaataattatagtcaactgt |
485 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
22046868 |
cataagagtttgtgatttcatgattcctagaaatattttgctaaaaatttagaaattgaaac----atagcaatctttgaataattatagtcaactgt |
22046775 |
T |
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