View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15892_low_4 (Length: 410)
Name: NF15892_low_4
Description: NF15892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15892_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 1446305 - 1446683
Alignment:
| Q |
17 |
tgaagatcttcaataactggacaataccctagaagacacttaagatctccatatcgatcaaacttaatgtctttcaaatgtagggttttgagtgaaggta |
116 |
Q |
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| T |
1446305 |
tgaagatcttcaataactggacaataccctagaagacacttaagatctccatatcgatcaaacttaatgtctttcaaatgtagggttttgagtgaaggta |
1446404 |
T |
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| Q |
117 |
atattatgggataataacaaaatgccggacccatataaagataactgagcttaagtacaacaagggttgtacaagtaagaatagtattagacaatttagg |
216 |
Q |
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| T |
1446405 |
atattatgggataataacaaaatgccggacccatataaagataactgagcttaagaacaacaagggttgtacaagtaagaatagtattagacaatttagg |
1446504 |
T |
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| Q |
217 |
gtttattgttgcccaattatgcgatatgtgttcatcgtcccagatgaaactgtggatggaattattaccagcagcttttcgcaagctcaagatggagtca |
316 |
Q |
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| T |
1446505 |
ggttattgttgcccaattatgcgatatgtgttcatcgtcccagatgaaactgtggatggaattattaccagcagcttttcgcaagcacaagatggagtca |
1446604 |
T |
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| Q |
317 |
acgaatttgtcgaataaacgtgaatcggagtgtttggtttcggtaaagttaatatctggaacacaaaaccgtagatgct |
395 |
Q |
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| T |
1446605 |
acgaatttgtcgaataagcgtgaatcggagtgtttggttttggtaaagtcaataactggaacaaaaaaccatagatgct |
1446683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 1459708 - 1459929
Alignment:
| Q |
17 |
tgaagatcttcaataactggacaataccctagaagacacttaagatctccatatcgatcaaacttaatgtctttcaaatgtagggttttgagtgaaggta |
116 |
Q |
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| T |
1459708 |
tgaagatcttcaagaactggacatccctctagaagacaatcaagatctccatattgttgaaactcaatgtctttcagatgtagggttttgagtgagggta |
1459807 |
T |
|
| Q |
117 |
atattatgggataataacaaaatgccggacccatataaagataactgagcttaagtacaacaagggttgtacaagtaagaatagtattagacaatttagg |
216 |
Q |
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|| ||||| |||||| |||||| | | ||||||| |||| | |||||||||||| | |||||||||| | ||||| |||||||||| |||| ||| |
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| T |
1459808 |
atcttatgagataattacaaaacccagaacccataaaaagttcactgagcttaagaataacaagggtttctctagtaaagatagtattaggaaattcagg |
1459907 |
T |
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| Q |
217 |
gtttattgttgcccaattatgc |
238 |
Q |
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|| |||| || ||||||||||| |
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| T |
1459908 |
gtatattctttcccaattatgc |
1459929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 12104882 - 12104846
Alignment:
| Q |
82 |
aatgtctttcaaatgtagggttttgagtgaaggtaat |
118 |
Q |
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| T |
12104882 |
aatgtatttcaaatgtagggttttgagtgagggtaat |
12104846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 45810950 - 45810996
Alignment:
| Q |
72 |
gatcaaacttaatgtctttcaaatgtagggttttgagtgaaggtaat |
118 |
Q |
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||||||| ||||| | ||||||||||||||||||||||||||||||| |
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| T |
45810950 |
gatcaaagttaatatttttcaaatgtagggttttgagtgaaggtaat |
45810996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 820760 - 820724
Alignment:
| Q |
81 |
taatgtctttcaaatgtagggttttgagtgaaggtaa |
117 |
Q |
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| T |
820760 |
taatgtctttcaaatgtagtgttttgagtgagggtaa |
820724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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