View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15892_low_5 (Length: 338)
Name: NF15892_low_5
Description: NF15892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15892_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 6685434 - 6685747
Alignment:
| Q |
18 |
tcattctacacttctacataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttctttggt |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6685434 |
tcattctacacttttacataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttctttggt |
6685533 |
T |
|
| Q |
118 |
atatactgatcaacaacaacttcatgtttgaggattggaggtaaccctctgccatccataatagaaccaactcgttcttttcgatttcataacacttggg |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6685534 |
atatactaatcaacaacaacttcatgtttgaggattggaggtaaccctctgccatccataatagaatcaactcgttcttttcgatttcataacacttggg |
6685633 |
T |
|
| Q |
218 |
attcaaagagcaataggcgaaacattgcttcaatgggtgcgaaaggtcttggtaactccgtcttagagaggacatgatacaattcttctcttcacccata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6685634 |
attcaaagagcaataggcgaaacattgcttcaatgggtgcgaaaggtcttggtaactccgtcttagagaggacatgatacaattcttctcttcacccata |
6685733 |
T |
|
| Q |
318 |
ctccagatgtctct |
331 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6685734 |
ctccagatgtctct |
6685747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 18768007 - 18768110
Alignment:
| Q |
28 |
cttctacataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttctttggtatatactgat |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18768007 |
cttctacataatcaaactaaattattttctgcataatcaaacaaccaaatatttaaaaagtataaacgagtaccggttaatttcttttgtatatactgat |
18768106 |
T |
|
| Q |
128 |
caac |
131 |
Q |
| |
|
|||| |
|
|
| T |
18768107 |
caac |
18768110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 13850544 - 13850639
Alignment:
| Q |
35 |
ataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttctttggtatatactgatcaac |
131 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||||||| || |||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
13850544 |
ataatcaaactaaattatttt-tgcataattaaacaacctaatatttaaaaagtataaacgagtaccagttaatttcttttgtatatactgatcaac |
13850639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University