View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15892_low_6 (Length: 333)

Name: NF15892_low_6
Description: NF15892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15892_low_6
NF15892_low_6
[»] chr1 (2 HSPs)
chr1 (100-320)||(24820289-24820509)
chr1 (24-101)||(14185525-14185602)
[»] chr7 (2 HSPs)
chr7 (21-90)||(37361309-37361378)
chr7 (229-313)||(37361000-37361084)
[»] chr2 (2 HSPs)
chr2 (21-79)||(38945328-38945386)
chr2 (127-215)||(38945241-38945329)
[»] chr6 (3 HSPs)
chr6 (127-215)||(18331314-18331402)
chr6 (21-79)||(18331401-18331459)
chr6 (23-67)||(32445304-32445348)
[»] chr3 (1 HSPs)
chr3 (113-220)||(55352450-55352557)
[»] chr5 (2 HSPs)
chr5 (113-182)||(36405104-36405173)
chr5 (113-220)||(18447270-18447377)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 100 - 320
Target Start/End: Original strand, 24820289 - 24820509
Alignment:
Q  100 gtgtgggtgtctccttctataggtttcaaatttcaagctatacatatgtgagtttctgtcatatgcgtgtattctaatctcttttttaaattttgataag 199  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  24820289 gtgtgggtgtctccttctataggtttcaaatttcaagttatacatatgtgagtttctgtcatatgcgtgtattctaatctctttcttaaattttgacaag 24820388  T
Q  200 tcggtgatttacatggtttaannnnnnnngaagtgatgcttggcaaaattgcatggtttctattgggtttaatagtttgtaagttgtgtgattgaaacta 299  Q
    |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24820389 tcggtgatttacatggtttaatattttttgaagtgatgcttggcaaaattgcatggtttctattgggtttaattgtttgtaagttgtgtgattgaaacta 24820488  T
Q  300 tatgtgatccttttgtctctg 320  Q
    |||||||||||||||||||||    
T  24820489 tatgtgatccttttgtctctg 24820509  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 14185525 - 14185602
Alignment:
Q  24 ttaaactacctataaatgttgtgattagttttacaaaatgtaatggtagattttaagtttcattagtttaatctttgt 101  Q
    |||||||||||||| |||||||||||||||||| | ||||  || |||||  |||||||  | |||||||||||||||    
T  14185525 ttaaactacctatacatgttgtgattagttttaaagaatgatatagtagacattaagttataatagtttaatctttgt 14185602  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 37361378 - 37361309
Alignment:
Q  21 tgattaaactacctataaatgttgtgattagttttacaaaatgtaatggtagattttaagtttcattagt 90  Q
    |||||||| |||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37361378 tgattaaaatactgataaatgttgtgattagttttacaaaatttaatggtagattttaagtttcattagt 37361309  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 229 - 313
Target Start/End: Complemental strand, 37361084 - 37361000
Alignment:
Q  229 gaagtgatgcttggcaaaattgcatggtttctattgggtttaatagtttgtaagttgtgtgattgaaactatatgtgatcctttt 313  Q
    |||||||||||||||  ||||||| | |||||||||| |||| || |||||||||||||||||||||||| ||||||||||||||    
T  37361084 gaagtgatgcttggcttaattgcaagatttctattggttttactattttgtaagttgtgtgattgaaactctatgtgatcctttt 37361000  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 38945386 - 38945328
Alignment:
Q  21 tgattaaactacctataaatgttgtgattagttttacaaaatgtaatggtagattttaa 79  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  38945386 tgattaagctacctataaatgttgtgatgagttttacaaaatgtaatgaaagattttaa 38945328  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 38945329 - 38945241
Alignment:
Q  127 aaatttcaagctatacatatgtgagtttctgtcatatgcgtgtattctaatctcttttttaaattttgataagtcggtgatttacatgg 215  Q
    |||||| || |||||||| |  |||||||||||||||| || |||||| |||||||| |||||||||||||| | ||||| ||||||||    
T  38945329 aaatttgaacctatacattttagagtttctgtcatatgtgtctattcttatctctttcttaaattttgataatttggtgacttacatgg 38945241  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 18331402 - 18331314
Alignment:
Q  127 aaatttcaagctatacatatgtgagtttctgtcatatgcgtgtattctaatctcttttttaaattttgataagtcggtgatttacatgg 215  Q
    |||||| || |||||||| |  |||||||||||||||| || |||||| |||||||| |||||||||||||| | ||||| ||||||||    
T  18331402 aaatttgaacctatacattttagagtttctgtcatatgtgtctattcttatctctttcttaaattttgataatttggtgacttacatgg 18331314  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 18331459 - 18331401
Alignment:
Q  21 tgattaaactacctataaatgttgtgattagttttacaaaatgtaatggtagattttaa 79  Q
    ||||||| |||||||||||| ||||||  |||||||||||||||||||  |||||||||    
T  18331459 tgattaagctacctataaatattgtgagaagttttacaaaatgtaatgaaagattttaa 18331401  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 32445304 - 32445348
Alignment:
Q  23 attaaactacctataaatgttgtgattagttttacaaaatgtaat 67  Q
    ||||||||||||||| ||||||||||||| |||| | ||||||||    
T  32445304 attaaactacctatacatgttgtgattagctttaaagaatgtaat 32445348  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 55352450 - 55352557
Alignment:
Q  113 cttctataggtttcaaatttcaagctatacatatgtgagtttctgtcatatgcgtgtattctaatctcttttttaaattttgataagtcggtgatttaca 212  Q
    |||||||||||| ||||| | |||||||||||||| |||||  ||||||| | ||||||||| | |||||| ||||  |||||| | | ||| |||||||    
T  55352450 cttctataggttgcaaatgtgaagctatacatatgagagttgttgtcataggtgtgtattcttacctctttcttaagatttgatgatttggtaatttaca 55352549  T
Q  213 tggtttaa 220  Q
    ||||||||    
T  55352550 tggtttaa 55352557  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 36405173 - 36405104
Alignment:
Q  113 cttctataggtttcaaatttcaagctatacatatgtgagtttctgtcatatgcgtgtattctaatctctt 182  Q
    |||||| ||||| ||||| | |||||||||||||| |||||  ||||||||||||||||||| |||||||    
T  36405173 cttctacaggttgcaaatgtgaagctatacatatgagagttgttgtcatatgcgtgtattcttatctctt 36405104  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 18447377 - 18447270
Alignment:
Q  113 cttctataggtttcaaatttcaagctatacatatgtgagtttctgtcatatgcgtgtattctaatctcttttttaaattttgataagtcggtgatttaca 212  Q
    |||||| ||||| ||||| | |||||||||||||| |||||  ||||| | | ||||||||| |||||||| ||||  |||||| | | ||| |||||||    
T  18447377 cttctacaggttgcaaatgtgaagctatacatatgagagttgttgtcaaaggtgtgtattcttatctctttcttaagatttgatgatttggtaatttaca 18447278  T
Q  213 tggtttaa 220  Q
    ||||||||    
T  18447277 tggtttaa 18447270  T

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