View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15892_low_8 (Length: 202)
Name: NF15892_low_8
Description: NF15892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15892_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 43257576 - 43257746
Alignment:
| Q |
17 |
agagaaatatggccttcaaatcaagcttgttgctggatgtggagataaattctttggacggaaagggatgctatcacatcccgatgaaagagcttttcct |
116 |
Q |
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| T |
43257576 |
agagaaatatggccttcaaatcaagcttgttgctggatgtggagataaattctttggacggaaagggatgctatcacatcccgatgaaagagcttttcct |
43257675 |
T |
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| Q |
117 |
gactcaggaaaggtagattctgttggagaagtaacaaatgagtttaaaagtaatgacaaagaaaaagaagt |
187 |
Q |
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| T |
43257676 |
gactcaggaaaggtagattctgttggagaagtaacaaatgagtttaaaagtaatgacaaagaaaaagaagt |
43257746 |
T |
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Target: chr8; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 43255472 - 43255604
Alignment:
| Q |
55 |
gtggagataaattctttggacggaaagggatgctatcacatcccgatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtaacaaa |
154 |
Q |
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| T |
43255472 |
gtggagctaaattttttggacggaaagggataatgtcgcaatcagatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtagcaga |
43255571 |
T |
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| Q |
155 |
tgagtttaaaagtaatgacaaagaaaaagaagt |
187 |
Q |
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| T |
43255572 |
tgagtttaagagtgatgacaacgaaaaagaagt |
43255604 |
T |
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