View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15893_high_1 (Length: 598)

Name: NF15893_high_1
Description: NF15893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15893_high_1
NF15893_high_1
[»] chr4 (21 HSPs)
chr4 (242-569)||(45366280-45366607)
chr4 (11-242)||(45385889-45386121)
chr4 (365-516)||(48870351-48870496)
chr4 (365-516)||(48886037-48886182)
chr4 (242-447)||(7771093-7771298)
chr4 (242-447)||(7789778-7789983)
chr4 (242-342)||(45385073-45385176)
chr4 (371-525)||(48875661-48875809)
chr4 (360-449)||(45372251-45372340)
chr4 (398-449)||(48898561-48898612)
chr4 (408-525)||(37827106-37827217)
chr4 (396-458)||(48902778-48902840)
chr4 (17-137)||(30940672-30940793)
chr4 (34-72)||(12918371-12918409)
chr4 (242-284)||(48862933-48862975)
chr4 (34-72)||(50000924-50000962)
chr4 (472-541)||(48705455-48705524)
chr4 (242-351)||(48852349-48852458)
chr4 (413-454)||(50250967-50251008)
chr4 (242-298)||(7765310-7765366)
chr4 (478-526)||(50668968-50669016)
[»] chr3 (8 HSPs)
chr3 (241-447)||(11024715-11024927)
chr3 (241-447)||(11015703-11015915)
chr3 (380-526)||(47452018-47452158)
chr3 (388-440)||(11006147-11006199)
chr3 (17-72)||(13582562-13582617)
chr3 (17-72)||(37132998-37133053)
chr3 (17-106)||(26772811-26772901)
chr3 (17-69)||(53785762-53785814)
[»] chr1 (5 HSPs)
chr1 (17-147)||(37200035-37200166)
chr1 (34-177)||(37932111-37932254)
chr1 (22-72)||(36486944-36486994)
chr1 (17-69)||(45659650-45659702)
chr1 (34-141)||(50161346-50161454)
[»] chr8 (2 HSPs)
chr8 (360-447)||(15348666-15348753)
chr8 (242-296)||(15348551-15348605)
[»] scaffold0508 (1 HSPs)
scaffold0508 (388-450)||(12148-12210)
[»] chr5 (3 HSPs)
chr5 (17-72)||(37873637-37873692)
chr5 (416-454)||(29696072-29696110)
chr5 (17-69)||(42921750-42921802)
[»] chr2 (5 HSPs)
chr2 (17-72)||(34814818-34814873)
chr2 (35-72)||(13147096-13147133)
chr2 (16-72)||(2888568-2888624)
chr2 (120-180)||(3825884-3825944)
chr2 (17-69)||(18744956-18745008)
[»] chr6 (1 HSPs)
chr6 (121-179)||(959738-959796)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 242 - 569
Target Start/End: Complemental strand, 45366607 - 45366280
Alignment:
Q  242 actttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttattcatatcaacttcagctcgtctaacccgatctatagatgtaga 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366607 actttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttattcatatcaacttcagctcgtctaacccgatctatagatgtaga 45366508  T
Q  342 tgcatcgcttgaccatgattctgcttcactcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttata 441  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366507 tgcatcggttgaccatgattctgcttcactcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttata 45366408  T
Q  442 cttttgcactgttctttaactttaagcctttacctttggaatccatccactggatttcataaaaagatacctttgcctccttttgcttctcatttagatg 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45366407 cttttgcactgttctttaactttaagcctttacctttggaatccatccactggatttcataaaaaaatacctttgcctccttttgcttctcatttagatg 45366308  T
Q  542 atggaatagattatttctatggtttttg 569  Q
    ||||||||||||||||||||||||||||    
T  45366307 atggaatagattatttctatggtttttg 45366280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 45386121 - 45385889
Alignment:
Q  11 aatgtgaatggtataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccactttcct-gacttaatttttagggttgcatgtcctactgcaa 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||||||||||||| ||||    
T  45386121 aatgtaaatggtataaaaagaaattgattgtcagaacacgctttcttatgtttgaccactttccttgacttagcttttagggttgcatgtcctaccgcaa 45386022  T
Q  110 aagttttgggccctaatcccacaagtggtgaagcatcaaccaagtccatatatgcatgctttcctcctacttgtacaccataacatcatcatcgatactc 209  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  45386021 aagtttcgggccctaatcccacaagtggtgaagcatcaaccaagtccatttatgcatgctttcctcctacctgtacaccataacatcttcatcgatactc 45385922  T
Q  210 ccaccgcccgaaaatatcaaaaaggacatccaa 242  Q
    |||||||||||| ||||||||||||||||||||    
T  45385921 ccaccgcccgaatatatcaaaaaggacatccaa 45385889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 365 - 516
Target Start/End: Original strand, 48870351 - 48870496
Alignment:
Q  365 cttcactcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgcactgttctttaacttt 464  Q
    ||||| |||||||| ||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||| | ||||| ||| ||  |||       
T  48870351 cttcagtcaatcttgattttctgcttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaac--- 48870447  T
Q  465 aagcctttacctttggaatccatccactggatttcataaaaagatacctttg 516  Q
       ||| ||||| |||||||||||||| |||||||| ||| | |||||||||    
T  48870448 ---cctctacctatggaatccatccaccggatttcacaaacaaatacctttg 48870496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 365 - 516
Target Start/End: Original strand, 48886037 - 48886182
Alignment:
Q  365 cttcactcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgcactgttctttaacttt 464  Q
    ||||| |||||||| ||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||| | ||||| ||| ||  |||       
T  48886037 cttcagtcaatcttgattttctgcttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaac--- 48886133  T
Q  465 aagcctttacctttggaatccatccactggatttcataaaaagatacctttg 516  Q
       ||| ||||| |||||||||||||| |||||||| ||| | |||||||||    
T  48886134 ---cctctacctatggaatccatccaccggatttcacaaacaaatacctttg 48886182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 447
Target Start/End: Original strand, 7771093 - 7771298
Alignment:
Q  242 actttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttattcatatcaacttcagctcgtctaacccgatctatagatgtaga 341  Q
    |||||| ||||||||||||||||||| || | |||| ||||||| ||||| |||||| ||||||||||  | ||| |  ||  |||||||||||| | ||    
T  7771093 actttgaaaattcacattttcaacttgcctctgcaacacacacttgtagatttttatgcatatcaactcaatctcatgaaattcgatctatagattttga 7771192  T
Q  342 tgcatcgcttgaccatgattctgcttcactcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttata 441  Q
     ||||  ||| || ||||| |||||||| | || ||| |||||  |||||| |||||||||| |  | || |||||| |||||| |||||||| ||||||    
T  7771193 agcatttcttaacgatgatcctgcttcagtgaaccttaatttttcgcttccagaatcttattttcctgttgaaattagaggttcgtgtagagggtttata 7771292  T
Q  442 cttttg 447  Q
    ||||||    
T  7771293 cttttg 7771298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 447
Target Start/End: Original strand, 7789778 - 7789983
Alignment:
Q  242 actttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttattcatatcaacttcagctcgtctaacccgatctatagatgtaga 341  Q
    |||||| ||||||||||||||||||| || |||||| ||||||| ||||| ||||||  |||||||||  | ||| |  ||   ||||||||||| | ||    
T  7789778 actttgaaaattcacattttcaacttgcctccgcaacacacacttgtagatttttatgtatatcaactcaatctcatgaaatttgatctatagattttga 7789877  T
Q  342 tgcatcgcttgaccatgattctgcttcactcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttata 441  Q
     ||||  ||| || ||||| |||||||| | || ||| |||||  |||||| |||||||||| |  | || |||||| |||||| |||||||| ||||||    
T  7789878 agcatttcttaacgatgatcctgcttcagtgaaccttaatttttcgcttccagaatcttattttcctgtttaaattagaggttcgtgtagagggtttata 7789977  T
Q  442 cttttg 447  Q
    ||||||    
T  7789978 cttttg 7789983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 242 - 342
Target Start/End: Complemental strand, 45385176 - 45385073
Alignment:
Q  242 actttgcaaattcacattttcaactttccgccgcaaaacacactcgt----agagttttattcatatcaacttcagctcgtctaacccgatctatagatg 337  Q
    |||||||| |||||||||| |||||||||||| ||| |||| |||||    ||||||||||||||||||||||||||||||  | | ||||||||||||     
T  45385176 actttgcatattcacattt-caactttccgccacaacacaccctcgttggtagagttttattcatatcaacttcagctcgtaaatctcgatctatagatt 45385078  T
Q  338 tagat 342  Q
    |||||    
T  45385077 tagat 45385073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 525
Target Start/End: Original strand, 48875661 - 48875809
Alignment:
Q  371 tcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgcactgttctttaactttaagcct 470  Q
    |||||||| ||||||| ||||| ||| || | | |||| || ||||||||||||| || |||||||||||||| ||||| ||||       || ||||||    
T  48875661 tcaatcttgattttcttcttcctgaacctaactatgattttgaaattaaaggttcttgcagaggctttatactgttgcattgtt------tttcaagcct 48875754  T
Q  471 ttacctttggaatccatccactggatttcataaaaagatacctttgcctcctttt 525  Q
     ||||| |||||||||||||| |||||||| ||| | |||||| || ||||||||    
T  48875755 ctacctatggaatccatccaccggatttcacaaacaaatacctatgtctcctttt 48875809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 449
Target Start/End: Complemental strand, 45372340 - 45372251
Alignment:
Q  360 ttctgcttcactcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgca 449  Q
    |||||||||||| || |||  |||| ||  |||| ||||| ||| ||||||| |||||||||||||||||||||| |||||| |||||||    
T  45372340 ttctgcttcactaaaccttagttttgtggatccccaatctcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgca 45372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 449
Target Start/End: Original strand, 48898561 - 48898612
Alignment:
Q  398 cttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgca 449  Q
    |||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  48898561 cttattctgatcttgaactcaaatgttcatgtagaggctttatacttttgca 48898612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 525
Target Start/End: Complemental strand, 37827217 - 37827106
Alignment:
Q  408 tcttcaaattaaaggttcatgtagaggctttatacttttgcactgttctttaactttaagcctttacctttggaatccatccactggatttcataaaaag 507  Q
    ||||||||||||||||||| ||||||| ||| || |||||||| |||      |||||| | | ||| | ||||||||||||||||||||||| ||| |     
T  37827217 tcttcaaattaaaggttcaggtagagggtttgtatttttgcaccgtt------ctttaaacatctacatatggaatccatccactggatttcacaaacaa 37827124  T
Q  508 atacctttgcctcctttt 525  Q
    ||||| ||| ||||||||    
T  37827123 atacccttgtctcctttt 37827106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 458
Target Start/End: Original strand, 48902778 - 48902840
Alignment:
Q  396 atcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgcactgttcttt 458  Q
    |||||||| ||||||  |||||| ||||||||| ||||| ||| |||||||||||||||||||    
T  48902778 atcttattttgatctaaaaattataggttcatgcagagggtttgtacttttgcactgttcttt 48902840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 30940793 - 30940672
Alignment:
Q  17 aatggtataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccacttt-cctgacttaatttttagggttgcatgtcctactgcaaaagttt 115  Q
    ||||||||||||  |  |||||||||||||||||||||||  |||||||||||||| | ||||  || |||||||||||  |||||||  | ||||| ||    
T  30940793 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttacttgacgcaacttttagggttgtctgtcctatggtaaaaggtt 30940694  T
Q  116 tgggccctaatcccacaagtgg 137  Q
    ||   | |||||||||||||||    
T  30940693 tgacacttaatcccacaagtgg 30940672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 12918409 - 12918371
Alignment:
Q  34 ttgattgtcagaacacgctttcttgtgtttgaccacttt 72  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  12918409 ttgattgtcagaacacgatttcttatgtttgaccacttt 12918371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 48862933 - 48862975
Alignment:
Q  242 actttgcaaattcacattttcaactttccgccgcaaaacacac 284  Q
    |||||||||||||||||||||||||| | ||||||| ||||||    
T  48862933 actttgcaaattcacattttcaacttactgccgcaacacacac 48862975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 50000962 - 50000924
Alignment:
Q  34 ttgattgtcagaacacgctttcttgtgtttgaccacttt 72  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  50000962 ttgattgtcagaacacgctttctcatgtttgaccacttt 50000924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 541
Target Start/End: Complemental strand, 48705524 - 48705455
Alignment:
Q  472 tacctttggaatccatccactggatttcataaaaagatacctttgcctccttttgcttctcatttagatg 541  Q
    ||||| ||||||||||| ||||||||||| ||| | ||||||||| | ||||||| |||  |||||||||    
T  48705524 tacctgtggaatccatctactggatttcacaaacaaatacctttgtcaccttttggttccgatttagatg 48705455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 351
Target Start/End: Original strand, 48852349 - 48852458
Alignment:
Q  242 actttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttattcatatcaacttcagctcgtctaacccgatctatagatgtaga 341  Q
    ||||||||||||| |||||| || || | ||| ||| ||||||||||||| || ||||| | ||||||||||  | || ||| | |||||||||| | ||    
T  48852349 actttgcaaattcgcattttgaaattactgcctcaacacacactcgtagaattctattcgtctcaacttcagaacttcaaactctatctatagatctcga 48852448  T
Q  342 tgcatcgctt 351  Q
     |||||||||    
T  48852449 agcatcgctt 48852458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 50251008 - 50250967
Alignment:
Q  413 aaattaaaggttcatgtagaggctttatacttttgcactgtt 454  Q
    |||||||||||||||||||||| |||||| |||| |||||||    
T  50251008 aaattaaaggttcatgtagaggatttatatttttccactgtt 50250967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 7765310 - 7765366
Alignment:
Q  242 actttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttat 298  Q
    ||||||||||||||||||| ||||||  |   |||||||||||||||||| ||||||    
T  7765310 actttgcaaattcacatttccaacttaaccatgcaaaacacactcgtagatttttat 7765366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 50668968 - 50669016
Alignment:
Q  478 tggaatccatccactggatttcataaaaagatacctttgcctccttttg 526  Q
    ||||||||||||||  ||||||||||| ||||||| ||| |||||||||    
T  50668968 tggaatccatccaccagatttcataaacagataccattgtctccttttg 50669016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 447
Target Start/End: Complemental strand, 11024927 - 11024715
Alignment:
Q  241 aactttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttattcatatcaacttcagctcgtctaacccgatctatagatgtag 340  Q
    ||||||||||| || |||||| |||||||| | |||| |||||||  |||| || | ||||| ||||||  |||||    ||| ||||| |||||| | |    
T  11024927 aactttgcaaaatcgcattttgaactttcccctgcaacacacactaatagaattgtgttcatgtcaactctagctctggaaactcgatccatagattttg 11024828  T
Q  341 atgcatcgcttgaccatgattctgcttc------actcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagagg 434  Q
    | ||||||||| || |||||||||||||      ||| || ||| ||||| |||||||||||||||||||| ||||| |||||||| |||| ||||||||    
T  11024827 aagcatcgcttaacgatgattctgcttctacttcacttaaccttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcttgtagagg 11024728  T
Q  435 ctttatacttttg 447  Q
     |||||| |||||    
T  11024727 atttatagttttg 11024715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 447
Target Start/End: Complemental strand, 11015915 - 11015703
Alignment:
Q  241 aactttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttattcatatcaacttcagctcgtctaacccgatctatagatgtag 340  Q
    ||||||||||| || |||||| |||||||| | |||| |||||||  |||| || | ||||| ||||||  ||||| |  ||| ||||| || ||| | |    
T  11015915 aactttgcaaaatcgcattttgaactttccactgcaacacacactaatagaattgtgttcatgtcaactctagctcttgaaactcgatccattgattttg 11015816  T
Q  341 atgcatcgcttgaccatgattctgcttc------actcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagagg 434  Q
    | || |||||| || |||||||||||||      ||| || ||| ||||| ||| ||| ||||||||||||  |||| |||||||| |||||||||||||    
T  11015815 aagcgtcgcttaacgatgattctgcttctacttcactgaaccttaattttatgcctccagaatcttattctagtcttgaaattaaaagttcatgtagagg 11015716  T
Q  435 ctttatacttttg 447  Q
     |||||| |||||    
T  11015715 atttatagttttg 11015703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 380 - 526
Target Start/End: Complemental strand, 47452158 - 47452018
Alignment:
Q  380 attttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgcactgttctttaactttaagcctttacctttg 479  Q
    ||||| |||||||| ||||| | | | ||||| |||||||||||||||||||||| |||||||||||    ||||      ||| || | | ||| | ||    
T  47452158 attttttgcttccccaatctgagtataatcttgaaattaaaggttcatgtagagggtttatacttttaagttgtt------cttcaaacatctacatatg 47452065  T
Q  480 gaatccatccactggatttcataaaaagatacctttgcctccttttg 526  Q
    |||||||||||||||| |||| ||| | |||||||||||||||||||    
T  47452064 gaatccatccactggagttcacaaacaaatacctttgcctccttttg 47452018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 440
Target Start/End: Complemental strand, 11006199 - 11006147
Alignment:
Q  388 cttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttat 440  Q
    |||||||||||||||||| ||||| |||||||| |||||||| |||| |||||    
T  11006199 cttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttat 11006147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 13582562 - 13582617
Alignment:
Q  17 aatggtataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccacttt 72  Q
    ||||||||||||| |  |||||||||||||||| ||||||| ||||||| ||||||    
T  13582562 aatggtataaaaacacgttgattgtcagaacacactttcttatgtttgatcacttt 13582617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 37133053 - 37132998
Alignment:
Q  17 aatggtataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccacttt 72  Q
    ||||||||||||| |  |||||||||||||||||||||||  ||||| ||||||||    
T  37133053 aatggtataaaaacatgttgattgtcagaacacgctttctcatgtttaaccacttt 37132998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 26772811 - 26772901
Alignment:
Q  17 aatggtataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccacttt-cctgacttaatttttagggttgcatgtcctactg 106  Q
    ||||||||||||  |  ||||||||||||||||| |||||  |||||| ||||||| | ||||  || |||||||| ||||||||||||||    
T  26772811 aatggtataaaagcatgttgattgtcagaacacgttttctgatgtttggccactttgcttgacacaacttttagggatgcatgtcctactg 26772901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 53785762 - 53785814
Alignment:
Q  17 aatggtataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccac 69  Q
    ||||||||||||  |  ||||||||||||||||||||||| ||||||| ||||    
T  53785762 aatggtataaaagcatgttgattgtcagaacacgctttctcgtgtttggccac 53785814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 37200035 - 37200166
Alignment:
Q  17 aatggtataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccacttt-cctgacttaatttttagggttgcatgtcctactgcaaaagttt 115  Q
    ||||||||||||| | ||||||||| || ||| |||||||| |||||||||||||| | |||| ||| ||||| || ||||||||||| || ||||| |     
T  37200035 aatggtataaaaacatattgattgttagcacatgctttcttatgtttgaccactttacttgacgtaacttttatggctgcatgtcctattgtaaaagctc 37200134  T
Q  116 tgggccctaatcccacaagtggtgaagcatca 147  Q
     || || ||||||||| ||||||||| |||||    
T  37200135 cggtccttaatcccacgagtggtgaaacatca 37200166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 37932254 - 37932111
Alignment:
Q  34 ttgattgtcagaacacgctttcttgtgtttgaccactttcct-gacttaatttttagggttgcatgtcctactgcaaaagttttgggccctaatcccaca 132  Q
    |||||||||||||||| |||||| || |||||||| ||| || |||  || |||||||| ||  |||| ||||| |||||  |||| |||||||||||||    
T  37932254 ttgattgtcagaacac-ctttctcgtatttgaccattttgcttgacacaacttttagggctgtctgtcttactgtaaaagccttggcccctaatcccaca 37932156  T
Q  133 agtggtgaagcatcaaccaagtccatatatgcatgctttcctcct 177  Q
    ||||||||| | |||| ||||||||   ||||||| |||||||||    
T  37932155 agtggtgaaacctcaatcaagtccacgcatgcatgttttcctcct 37932111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 36486944 - 36486994
Alignment:
Q  22 tataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccacttt 72  Q
    |||||||||| ||||||||||| ||||||||||||  | ||||||||||||    
T  36486944 tataaaaagatattgattgtcaaaacacgctttctcatatttgaccacttt 36486994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 45659702 - 45659650
Alignment:
Q  17 aatggtataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccac 69  Q
    ||||||||||||  |  ||||||||||||||||||||||| ||||||| ||||    
T  45659702 aatggtataaaagcatgttgattgtcagaacacgctttctcgtgtttggccac 45659650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 50161454 - 50161346
Alignment:
Q  34 ttgattgtcagaacacgctttcttgtgtttgaccacttt-cctgacttaatttttagggttgcatgtcctactgcaaaagttttgggccctaatcccaca 132  Q
    |||||||| ||||||||||||||  |||||| ||||||| | ||||  || |||||||||||  |||||||| | |||||| |  | ||||||| ||||     
T  50161454 ttgattgtgagaacacgctttctcatgtttgtccactttgcttgacgcaacttttagggttgtctgtcctaccgtaaaagtctcagcccctaattccacg 50161355  T
Q  133 agtggtgaa 141  Q
    |||||||||    
T  50161354 agtggtgaa 50161346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 447
Target Start/End: Original strand, 15348666 - 15348753
Alignment:
Q  360 ttctgcttcactcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttg 447  Q
    |||||||||||||||| || ||||||| | |||  ||  | |||||||| || |||||||||||||||||||||||||| ||||||||    
T  15348666 ttctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaattaaaggttcatgtagaggctttgtacttttg 15348753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 15348551 - 15348605
Alignment:
Q  242 actttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagtttt 296  Q
    |||| |||||||||||||||||| || ||||||||| ||||||||||||| ||||    
T  15348551 acttcgcaaattcacattttcaaattaccgccgcaacacacactcgtagaatttt 15348605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 388 - 450
Target Start/End: Original strand, 12148 - 12210
Alignment:
Q  388 cttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgcac 450  Q
    ||||| |||||| ||| |||||||||||||||||||||||||||| | |||||| ||||||||    
T  12148 cttccggaatctcattttgatcttcaaattaaaggttcatgtagaaggtttatatttttgcac 12210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 37873692 - 37873637
Alignment:
Q  17 aatggtataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccacttt 72  Q
    ||||||||||||| |  |||||||||||||||||||||||  |||||| |||||||    
T  37873692 aatggtataaaaacatgttgattgtcagaacacgctttctcatgtttggccacttt 37873637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 454
Target Start/End: Original strand, 29696072 - 29696110
Alignment:
Q  416 ttaaaggttcatgtagaggctttatacttttgcactgtt 454  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  29696072 ttaaaggttcgtgtagaggctttatacttttgaactgtt 29696110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 42921750 - 42921802
Alignment:
Q  17 aatggtataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccac 69  Q
    ||||||||||||  |  ||||||||||||||||| ||||| ||||||||||||    
T  42921750 aatggtataaaagcatgttgattgtcagaacacgttttctcgtgtttgaccac 42921802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 34814873 - 34814818
Alignment:
Q  17 aatggtataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccacttt 72  Q
    ||||||||||||  | ||||||||||||||||||||||||  ||||||| ||||||    
T  34814873 aatggtataaaagcatattgattgtcagaacacgctttctcatgtttgatcacttt 34814818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 13147133 - 13147096
Alignment:
Q  35 tgattgtcagaacacgctttcttgtgtttgaccacttt 72  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  13147133 tgattgtcagaacacgctttctcatgtttgaccacttt 13147096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 2888568 - 2888624
Alignment:
Q  16 gaatggtataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccacttt 72  Q
    |||||||||||||| |  ||||||||||||||||| |||||  |||||| |||||||    
T  2888568 gaatggtataaaaacatgttgattgtcagaacacgttttctcatgtttgtccacttt 2888624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 3825884 - 3825944
Alignment:
Q  120 ccctaatcccacaagtggtgaagcatcaaccaagtccatatatgcatgctttcctcctact 180  Q
    ||||||||||||||| |||||| | |||| |||||||| | ||||||| ||| ||||||||    
T  3825884 ccctaatcccacaaggggtgaaacctcaatcaagtccacacatgcatgtttttctcctact 3825944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 18745008 - 18744956
Alignment:
Q  17 aatggtataaaaagaaattgattgtcagaacacgctttcttgtgtttgaccac 69  Q
    ||||||||||||  |  ||||||||||||||||||||||| ||||||| ||||    
T  18745008 aatggtataaaagtatgttgattgtcagaacacgctttctcgtgtttggccac 18744956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 959738 - 959796
Alignment:
Q  121 cctaatcccacaagtggtgaagcatcaaccaagtccatatatgcatgctttcctcctac 179  Q
    |||||||||| |||||||||| | |||| |||||||| | ||||||| |||||||||||    
T  959738 cctaatcccataagtggtgaaacttcaatcaagtccacacatgcatgttttcctcctac 959796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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