View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15893_high_10 (Length: 364)
Name: NF15893_high_10
Description: NF15893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15893_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 363
Target Start/End: Original strand, 34971090 - 34971457
Alignment:
| Q |
7 |
agcacagatgaatagtgttgccattgtttttcctaaaactactactttagtgtgtcggttttatattttaaaaaatattagagctaaatgcaaggcatat |
106 |
Q |
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| T |
34971090 |
agcacagatgaatagtgttgccattatttttcctaaaactactactttagtgtgtcggttttatattttaaaaaatattagagctaaatacaaggcatat |
34971189 |
T |
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| Q |
107 |
tgtatagtcaaatctaatgatgccaaagtgatgaatattaaagggaaagattcccaagaggtggatgtgaaagagaaggaagtcacaaaggtgaatatat |
206 |
Q |
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| T |
34971190 |
tgcatagtcaaatctaatgatgccaaagtgatgaatatcaaagggaaagattcccaagaggtggatgtgaaagagaaggaagtcacaaaggtgaatatat |
34971289 |
T |
|
| Q |
207 |
gcccaaattgacggtaaaggtttgatgttatgttatggagtttcagttatttgatgtaatgttgtgtaatatgtcgtcaaattatgtgatattggactct |
306 |
Q |
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| T |
34971290 |
gcccaaattgacagtaaaggtttgatgttatgttatggagtttcagttatttgatgtaatgttgtgtaatatgtcgtcaaattatgtgatgttggactct |
34971389 |
T |
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| Q |
307 |
tgttgaatatcaatcattt-----------atgtaatgttgaattgacgtaatgttaataaattatga |
363 |
Q |
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| T |
34971390 |
tgttgaatttcaatcatttatgtattgttaatgtaatgttgaattggcgtaatgttaataaattatga |
34971457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 16061350 - 16061310
Alignment:
| Q |
146 |
aaagggaaagattcccaagaggtggatgtgaaagagaagga |
186 |
Q |
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| T |
16061350 |
aaaggaaaagattcccaaaaggtggatgggaaagagaagga |
16061310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 38 - 186
Target Start/End: Complemental strand, 7340654 - 7340506
Alignment:
| Q |
38 |
cctaaaactactactttagtgtgtcggttttatattttaaaaaatattagagctaaatgcaaggcatattgtatagtcaaatctaatgatgccaaagtga |
137 |
Q |
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| T |
7340654 |
cctaaatctattgctttagtgtgtcggtttcatattttgaaaaatgtaatagctaaatggaagacaaactgcatagtcaaatctaaggatgtcaaagtgg |
7340555 |
T |
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| Q |
138 |
tgaatattaaagggaaagattcccaagaggtggatgtgaaagagaagga |
186 |
Q |
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| T |
7340554 |
tgaatatcaaagagaaagatttccaagaggttgatggcaaagagaagga |
7340506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 929153 - 929251
Alignment:
| Q |
238 |
gttatggagtttca-gttatttgatgtaatgttgtgtaatatgtcgtcaaattatgtgatattggactcttgttgaatatcaatcatttatgtaatgtt |
335 |
Q |
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| T |
929153 |
gttatggagttttaagttatttgatgtaatgttgtgtagtatgcagtcaatttatgtaatgttagattgttgttgaatttcaattgtttgtgtaatgtt |
929251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 35249510 - 35249656
Alignment:
| Q |
40 |
taaaactactactttagtgtgtcggttttatattttaaaaaatattagagctaaatgcaaggcatattgtatagtcaaatctaatgatgccaaagtgatg |
139 |
Q |
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| T |
35249510 |
taaaactactgccttactctgtcagttttatatttctaaaaacgttagaactaaatgcaagatatactgaagagtcaaatataaggatgccaaaacggtg |
35249609 |
T |
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| Q |
140 |
aatattaaagggaaagattcccaagaggtggatgtgaaagagaagga |
186 |
Q |
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| T |
35249610 |
aatgtcacaggaaaatattctcaagaggtggacgggaaagataagga |
35249656 |
T |
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