View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15893_high_11 (Length: 361)

Name: NF15893_high_11
Description: NF15893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15893_high_11
NF15893_high_11
[»] chr5 (9 HSPs)
chr5 (1-332)||(13447065-13447396)
chr5 (1-320)||(13419514-13419833)
chr5 (1-265)||(13426405-13426669)
chr5 (1-277)||(13413169-13413445)
chr5 (126-246)||(13388988-13389108)
chr5 (126-246)||(13454143-13454263)
chr5 (125-246)||(13385167-13385288)
chr5 (1-72)||(13454018-13454089)
chr5 (1-79)||(13393562-13393640)
[»] chr4 (2 HSPs)
chr4 (18-92)||(47601353-47601427)
chr4 (199-235)||(47601534-47601570)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 13447065 - 13447396
Alignment:
Q  1 caagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccataggtgatagtgccaccacgagacttacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  13447065 caagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttacc 13447164  T
Q  101 attgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  13447165 attgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctactttg 13447264  T
Q  201 tctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgagcaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13447265 tctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataacgaaattgagcaa 13447364  T
Q  301 ttattttctactcgtttcttttgattgactca 332  Q
    ||||||||||||||||||||||||||||||||    
T  13447365 ttattttctactcgtttcttttgattgactca 13447396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 13419514 - 13419833
Alignment:
Q  1 caagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccataggtgatagtgccaccacgagacttacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||  |||||| ||||| ||||  |    
T  13419514 caagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactttgc 13419613  T
Q  101 attgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactctg 200  Q
    |    ||||    ||| || | | |||||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||||||| || ||| ||    
T  13419614 accacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaactttg 13419713  T
Q  201 tctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgagcaa 300  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||||| ||||| |||||| |||||  |||||||| || | |||||| |||||||| |||    
T  13419714 tctccaactttaaacttttctactttgcttccaacctcggttactatacccgcaagttcatgcctgcatttattaaataaattataaacaaattgaacaa 13419813  T
Q  301 ttattttctactcgtttctt 320  Q
    |||||| |||||| ||||||    
T  13419814 ttatttactactcatttctt 13419833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 13426405 - 13426669
Alignment:
Q  1 caagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccataggtgatagtgccaccacgagacttacc 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||||||| ||||   ||||| ||||| ||||| |    
T  13426405 caagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatacttagc 13426504  T
Q  101 attgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactctg 200  Q
    |    ||||    || | || || |||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||| |||||| ||    
T  13426505 accacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctactttg 13426604  T
Q  201 tctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcct 265  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| | ||||| |||||| |||||    
T  13426605 tctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcct 13426669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 13413169 - 13413445
Alignment:
Q  1 caagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccataggtgatagtgccaccacgagacttacc 100  Q
    ||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||  || ||| ||||| ||||  |    
T  13413169 caagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttggc 13413268  T
Q  101 attgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactctg 200  Q
    |    ||||      | |||||| |||||||||||||| || |||   ||||| ||  || || ||||||||||||| || ||| || || |||||| ||    
T  13413269 accacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctactttg 13413368  T
Q  201 tctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattaca 277  Q
    ||||||||||||||||| |  ||||||||||| || |||||||||| ||||| ||| || ||||| |||||||||||    
T  13413369 tctccaactttaaacttctccactttgcttcctacttctgttactatacccgcaagctcatgcctgtatttattaca 13413445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 13389108 - 13388988
Alignment:
Q  126 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactctgtctccaactttaaacttttttactt 225  Q
    |||||||| |||| || |||  ||||||||| ||| || |||||||||||||||||||| || || |||||| |||||||||| || ||||||| |||||    
T  13389108 cagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactt 13389009  T
Q  226 tgcttcccacctctgttacta 246  Q
    |||||||||||| ||| ||||    
T  13389008 tgcttcccacctttgtcacta 13388988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 13454143 - 13454263
Alignment:
Q  126 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactctgtctccaactttaaacttttttactt 225  Q
    ||||||||||||| ||  ||  ||||||||| ||| ||  |||| |||||||||| | ||||||| |||||||||||||||||||| |||||||| ||||    
T  13454143 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 13454242  T
Q  226 tgcttcccacctctgttacta 246  Q
    |||||||||| ||||| ||||    
T  13454243 tgcttcccacttctgtaacta 13454263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 13385288 - 13385167
Alignment:
Q  125 gcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactctgtctccaactttaaacttttttact 224  Q
    ||||||||| |||| || |||  ||||||||| ||| || |||||||||||||  ||||| || || |||||| |||||||||| || ||||||| ||||    
T  13385288 gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact 13385189  T
Q  225 ttgcttcccacctctgttacta 246  Q
    ||||||||||||| ||| ||||    
T  13385188 ttgcttcccacctttgtcacta 13385167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 13454018 - 13454089
Alignment:
Q  1 caagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccat 72  Q
    ||||||||||   ||| |||||||||| ||||||||||||||| | |||||||||||| | ||| |||||||    
T  13454018 caagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat 13454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 13393640 - 13393562
Alignment:
Q  1 caagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccataggtgat 79  Q
    |||| ||||||| |||||||||| |||  | ||||||||| ||||||||||||||||| | | | |||||||| |||||    
T  13393640 caagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 13393562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 47601353 - 47601427
Alignment:
Q  18 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccataggtgatagtgccaccacga 92  Q
    |||||| ||| |||||||||||||||| ||||||||||||| | | ||||||| || ||| | |||||| |||||    
T  47601353 ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga 47601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 47601534 - 47601570
Alignment:
Q  199 tgtctccaactttaaacttttttactttgcttcccac 235  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  47601534 tgtctccaactttgaacttttctactttgcttcccac 47601570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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