View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15893_high_17 (Length: 325)
Name: NF15893_high_17
Description: NF15893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15893_high_17 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 31 - 325
Target Start/End: Original strand, 180976 - 181270
Alignment:
| Q |
31 |
aatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttg |
130 |
Q |
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| T |
180976 |
aatattactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttg |
181075 |
T |
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| Q |
131 |
aatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgtc |
230 |
Q |
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| T |
181076 |
aattgcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttccagtaacagtgatctctacacctttcattatatgtc |
181175 |
T |
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| Q |
231 |
tcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcac |
325 |
Q |
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| T |
181176 |
tcaatatcaacccactgctcttgcttccacttgctctgcctcaccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcac |
181270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 30 - 325
Target Start/End: Original strand, 1701402 - 1701697
Alignment:
| Q |
30 |
caatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatctt |
129 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1701402 |
caatactactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatctt |
1701501 |
T |
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| Q |
130 |
gaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgt |
229 |
Q |
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| T |
1701502 |
gaatttcaccctacctttttctgtgtaaaggatcaggtcacgggggcgacgttgatgcgcggttcaagtaacagtgatctctacacctttcatcctaagt |
1701601 |
T |
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| Q |
230 |
ctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcac |
325 |
Q |
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| T |
1701602 |
ctcaatatcaacccactgctcttgcttccacctgctccgcctccccttctttatggcatgctcgtttcggtcatccctctttcagagttcttgcac |
1701697 |
T |
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