View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15893_high_25 (Length: 300)

Name: NF15893_high_25
Description: NF15893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15893_high_25
NF15893_high_25
[»] chr8 (4 HSPs)
chr8 (29-210)||(9624198-9624380)
chr8 (47-171)||(54189-54315)
chr8 (30-172)||(22756353-22756498)
chr8 (21-172)||(16595083-16595236)
[»] chr4 (2 HSPs)
chr4 (130-172)||(40792438-40792480)
chr4 (119-163)||(7554969-7555013)
[»] chr7 (1 HSPs)
chr7 (120-172)||(21408647-21408699)
[»] chr5 (2 HSPs)
chr5 (97-172)||(27839076-27839151)
chr5 (47-99)||(28090471-28090523)
[»] chr6 (1 HSPs)
chr6 (119-172)||(7396183-7396236)
[»] chr1 (1 HSPs)
chr1 (119-172)||(26733582-26733635)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 9624380 - 9624198
Alignment:
Q  29 tcagttgtacactgtttgtttgtaaaattgtttctgggacaaggcaaacgggagacaagagacatgacaaacataaattttcgacccttgctaaaccata 128  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9624380 tcagttgtacactgtttatttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacataaattttcgacccttgctaaaccaca 9624281  T
Q  129 acacaactttttgtttcatgcacaagttatctaaattacaa-aaaattgtataagacnnnnnnnttattcaataccataaaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||    
T  9624280 acacaactttttgtttcatgcacaagttatctaaattacaaaaaaattgtataagacaaaaaaattattcaataccataaaaa 9624198  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 54315 - 54189
Alignment:
Q  47 tttgtaaaattgtttctgggacaaggcaaacgggagacaagagacatgacaaa--cataaattttcgacccttgctaaaccataacacaactttttgttt 144  Q
    ||||||||| |||||||| |||| | ||| | ||| ||||| |||||||||||  |||||||||| | || ||||||||||| | |||||||||||||      
T  54315 tttgtaaaactgtttctgagacatgacaatccggacacaagggacatgacaaaaacataaatttttgtcctttgctaaaccacatcacaactttttgtcc 54216  T
Q  145 catgcacaagttatctaaattacaaaa 171  Q
    ||   |||||||||| ||| |||||||    
T  54215 cacatacaagttatcgaaaatacaaaa 54189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 22756353 - 22756498
Alignment:
Q  30 cagttgtacactgtttg-tttgtaaaattgtttctgggacaaggcaaacgggagacaagagacatgacaaa--cataaattttcgacccttgctaaacca 126  Q
    ||||| |||| |||||| ||||||||| ||||||||||| | | ||||   ||| ||||||||| ||||||  ||||||||||   ||||   || ||||    
T  22756353 cagttatacaatgtttgatttgtaaaactgtttctgggataggacaaatttgaggcaagagacaagacaaaaacataaatttttatccctcattatacca 22756452  T
Q  127 taacacaactttttgtttcatgcacaagttatctaaattacaaaaa 172  Q
     ||||||||||||||| ||| | |||||||||||||| ||||||||    
T  22756453 caacacaactttttgtatcacgtacaagttatctaaaatacaaaaa 22756498  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 16595083 - 16595236
Alignment:
Q  21 ggacatcatcagttgtacactgtttg-tttgtaaaattgtttctgggacaaggcaaacgggagacaagagacatgacaaa--cataaattttcgaccctt 117  Q
    ||||| || |||||||| | |||||| |||||||| ||||||||||||||   ||||| | || |||| |||| ||||||  ||| || ||| | ||||     
T  16595083 ggacaacaccagttgtatattgtttgatttgtaaa-ttgtttctgggacagaacaaactgtaggcaagggacaggacaaaaacatgaagttttgtccctc 16595181  T
Q  118 gctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 172  Q
    ||||| ||| |||||||||||||||  || | |||||||||||||| ||||||||    
T  16595182 gctaatccacaacacaactttttgtcccacgtacaagttatctaaaatacaaaaa 16595236  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 40792480 - 40792438
Alignment:
Q  130 cacaactttttgtttcatgcacaagttatctaaattacaaaaa 172  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  40792480 cacaactttttgtttcatgtacaagttatctaaaatacaaaaa 40792438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 7554969 - 7555013
Alignment:
Q  119 ctaaaccataacacaactttttgtttcatgcacaagttatctaaa 163  Q
    |||||||||||||||||||||||| ||| | ||||||| ||||||    
T  7554969 ctaaaccataacacaactttttgtctcacgtacaagttgtctaaa 7555013  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 21408647 - 21408699
Alignment:
Q  120 taaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 172  Q
    ||||||| |||| |||||||| ||||||| |||||||||||||| ||||||||    
T  21408647 taaaccacaacataactttttatttcatgtacaagttatctaaaatacaaaaa 21408699  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 27839076 - 27839151
Alignment:
Q  97 aaacataaattttcgacccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 172  Q
    ||||||||||||| | ||||  | ||||||||| |||||||||||| ||||| ||||||| |||||| ||| ||||    
T  27839076 aaacataaatttttgtccctcaccaaaccataaaacaactttttgtctcatgtacaagttgtctaaaataccaaaa 27839151  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 28090471 - 28090523
Alignment:
Q  47 tttgtaaaattgtttctgggacaaggcaaacgggagacaagagacatgacaaa 99  Q
    ||||||||| |||||| || ||||||||||| |||| |||| |||||||||||    
T  28090471 tttgtaaaactgtttcaggtacaaggcaaactggaggcaagggacatgacaaa 28090523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 7396183 - 7396236
Alignment:
Q  119 ctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 172  Q
    ||||||||  |||||||||||||| ||| | |||||||||||||| ||||||||    
T  7396183 ctaaaccactacacaactttttgtctcacgtacaagttatctaaaatacaaaaa 7396236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 26733635 - 26733582
Alignment:
Q  119 ctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 172  Q
    |||||||||||||||||||||||  ||||| ||||||| |||||| ||| ||||    
T  26733635 ctaaaccataacacaactttttgcctcatgtacaagttgtctaaaataccaaaa 26733582  T

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