View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15893_high_3 (Length: 428)
Name: NF15893_high_3
Description: NF15893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15893_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 24 - 400
Target Start/End: Original strand, 55174175 - 55174550
Alignment:
| Q |
24 |
catcaatcaatcttatgaatccatcatttgttgttgttatattattgtaatgatcatggatgtagtaattnnnnnnnnnnnccatgtatgaattatacat |
123 |
Q |
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| T |
55174175 |
catcaatcaatcttatgaatccatcatctgttgttattatattattgtaatgatcatggatgtagtgattaaataaaaaa-ccatgaatgaattatacat |
55174273 |
T |
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| Q |
124 |
caggggtgctgcgagtgtaatggatggaaccggagaagaggagctcgcgtcttccattgacaaagagtgatttaccatcataagtaacattgttaatgcc |
223 |
Q |
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| T |
55174274 |
caggggtgctgcgagtgtaatggatggaaccggagaagaggagctcgcgtcttccattgacaaagagtgatttaccatcataagtaacattgttaatgcc |
55174373 |
T |
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| Q |
224 |
tgcaacacgaccatgatcatgtgctgcggcaatggctggtaagagaactaataatatggaaaggaaggcgagattgtgagtgggagtcatgtttgtttgg |
323 |
Q |
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| T |
55174374 |
tgcaacacgaccatgatcatgtgctgcgacaatggctggtaagagaactaataatatggaaaggaaggcgagattgtgagtgggagtcatgtttgtttga |
55174473 |
T |
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| Q |
324 |
cgcaaacatacacggctcaaacaatatgatgagagaggtggtcagaataaacgagccttcgcctggatcaaccttct |
400 |
Q |
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| T |
55174474 |
cgcaaacatacacggctcaaacaatatgatgagagaggtggtcagaataaacgagccttcacctggatcaaccttct |
55174550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 27720302 - 27720258
Alignment:
| Q |
118 |
atacatcaggggtgctgcgagtgtaatggatggaaccggagaaga |
162 |
Q |
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| T |
27720302 |
atacatcaggggtgcttcgtggataatggatggaaccggagaaga |
27720258 |
T |
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