View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15893_high_4 (Length: 419)
Name: NF15893_high_4
Description: NF15893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15893_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 27 - 268
Target Start/End: Original strand, 34832318 - 34832570
Alignment:
| Q |
27 |
tcatcaataagaggatgaagtttgggcacatcaaacagaacctttgcttccaaatgctgaagtatctcttgatcattcggatcaaacttcactcctgccg |
126 |
Q |
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| T |
34832318 |
tcatcaataagaggatgaagtttgggcacatcaaacagaacctttgcttccaaatgctgaagtatctcttgatcattcggatcaaacttcactcctgccg |
34832417 |
T |
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| Q |
127 |
gtaaacccggcagttcattgattccaccctattcaatcattcacacacaatcaataataaagttaaaaaactaaataaagattg-----------gtggt |
215 |
Q |
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| T |
34832418 |
gtaaacccggcagttcattgattccaccctattcaatcattcacacacaatcaataataaagttaaaaagctaaataaagattggtggtgcgtcagtggt |
34832517 |
T |
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| Q |
216 |
gcgtcatgtgtgtgagtgttgaaagtccagaaagtactgagttcgatttctgc |
268 |
Q |
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| T |
34832518 |
gcgtcatgtgtgtgagtgttgaaagtccagaaagtactgtgttcgatttctgc |
34832570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 34832641 - 34832692
Alignment:
| Q |
339 |
cctgatcttgaaattcaatgttatggccacatgaggggcaagttagggttcg |
390 |
Q |
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| T |
34832641 |
cctgatcttgaaattcaatgttatggccacatgaggggcaagttagggttcg |
34832692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 30505009 - 30504955
Alignment:
| Q |
67 |
cctttgcttccaaatgctgaagtatctcttgatcattcggatcaaacttcactcc |
121 |
Q |
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| T |
30505009 |
cctttgcttccaaatgttcaagaatctcttgatctgtaggatcaaacttcactcc |
30504955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 27 - 268
Target Start/End: Original strand, 28951010 - 28951263
Alignment:
| Q |
27 |
tcatcaataagaggatgaagtttgggcacatcaaacagaacctttgcttccaaatgctgaagtatctcttgatcattcggatcaaacttcactcctgccg |
126 |
Q |
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| T |
28951010 |
tcatcaataagaggatgaagtttgggcacatcaaacagaacctttgcttccaaatgctgaagtatctcttgatcattcggatcaaacttcactcctgccg |
28951109 |
T |
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| Q |
127 |
gtaaacccggcagttcattgattccaccctattcaatcattcacacacaatcaataataaagttaaaaaactaaataaagattgg------------tgg |
214 |
Q |
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| T |
28951110 |
gtaaacccggcagttcattgattccaccctattcaatcattcacacacaaccaattataaagttaaaaaactaaataaagattggagcattagtgattgg |
28951209 |
T |
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| Q |
215 |
tgcgtcatgtgtgtgagtgttgaaagtccagaaagtactgagttcgatttctgc |
268 |
Q |
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| T |
28951210 |
tgcgtcatgtgtgtgagtgttgaaagtccagaaagtactgagttcgatttctgc |
28951263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 28951334 - 28951385
Alignment:
| Q |
339 |
cctgatcttgaaattcaatgttatggccacatgaggggcaagttagggttcg |
390 |
Q |
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| T |
28951334 |
cctgatcttgaaattcaatgttatggccacatgaggggcaagttagagttcg |
28951385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 4234166 - 4234035
Alignment:
| Q |
27 |
tcatcaataagaggatgaagtttgggcacatcaaacagaacctttgcttccaaatgctgaagtatctcttgatcattcggatcaaacttcactcctgccg |
126 |
Q |
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||||||||||| |||||||| |||| |||| | ||| || |||||||| ||||||| ||||| ||| |||| | || ||||| |||||||| || | |
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| T |
4234166 |
tcatcaataagtggatgaagcttggagacattagacatcacttttgcttctaaatgctctagtatttctacatcacttgggtcaaatttcactccagctg |
4234067 |
T |
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| Q |
127 |
gtaaacccggcagttcattgattccaccctat |
158 |
Q |
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|||| ||||||| |||||| | |||||||||| |
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| T |
4234066 |
gtaaccccggcaattcattaactccaccctat |
4234035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 38886600 - 38886551
Alignment:
| Q |
69 |
tttgcttccaaatgctgaagtatctcttgatcattcggatcaaacttcac |
118 |
Q |
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| T |
38886600 |
tttgcttccaaatgttcaagaatctcttgatcagttggatcaaacttcac |
38886551 |
T |
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