View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15893_high_9 (Length: 374)
Name: NF15893_high_9
Description: NF15893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15893_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 30 - 350
Target Start/End: Original strand, 42935443 - 42935766
Alignment:
| Q |
30 |
tattagcagcagaggaaattaggtgaagcttgatattctccagctgcatctccagctgcaagttcttcttcttctcattttccaattctgtcctcaactt |
129 |
Q |
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| T |
42935443 |
tattagcagcagaggaaattaggtgaagcttgatattctccagctgcatctccagctgcaagttcttcttcttctcattttccaattctgtcctcaactt |
42935542 |
T |
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| Q |
130 |
agagatctcttgcaccattttctcatcactttcagccacatgaatctcctctccaccaattagattcattagaaacttaacttgtcccaactcttgttcc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42935543 |
agagatctcttgcaccattttctcatcactttcagccacatgaatctcctctccaccaattagattcattagaaacttaacttgtcccaactcttgttcc |
42935642 |
T |
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| Q |
230 |
aagctctctttcaacacattcaacgttgccaacgtagcttcgcggttcttaacaacaccaccaacattttcatgatca---acatcagtagtattggtct |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |
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| T |
42935643 |
aagctctctttcaacacattcaacgttgccaacgtagcttcacggttcttaacaacaccaccgacattttcatgatcaaccacatcagaagtattggtct |
42935742 |
T |
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| Q |
327 |
ttggctccatcacagttcctgatg |
350 |
Q |
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|||||||||||||||||||||||| |
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| T |
42935743 |
ttggctccatcacagttcctgatg |
42935766 |
T |
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