View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15894_high_11 (Length: 329)
Name: NF15894_high_11
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15894_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 42848642 - 42848952
Alignment:
| Q |
19 |
tcacacttaatgaactcttgcaatagttcaattgtgaaatattccaaaccaaattcatgttttctgttatagttcagtctttctccctatttgatgatgt |
118 |
Q |
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| T |
42848642 |
tcacacttaatgaactcttgcaatagttcaattgtgaaatattccaaaccaaattcatgttttctgttatagttcagtctttctccctatttgatgatgt |
42848741 |
T |
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| Q |
119 |
atatgtcttctgtcaactccatacaccaaatagaacatttgtccaaccacatttacatgagaatttatttgaatatccaagtttttaaataagaatattg |
218 |
Q |
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| T |
42848742 |
atatgtcttctgtcaactccatacaccaaatagaacatttgtccaaccacatttacatgagaatttatttgaatatccaagtttttaaataagaatattg |
42848841 |
T |
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| Q |
219 |
attgcattctgtatatctacctctttcgagttttgaaacactgatgtcatttccttttcttttcatacagctaagaaacaaagttcggttgcgaactcag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42848842 |
attgcattctgtatatctacctctttcgagttttgaaacactgatgtcatttccttttcttttcatacagctaagaaacaaagttcggttgcgaactcag |
42848941 |
T |
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| Q |
319 |
attctagtgtt |
329 |
Q |
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| T |
42848942 |
attctagtgtt |
42848952 |
T |
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