View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15894_high_14 (Length: 307)
Name: NF15894_high_14
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15894_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 3172938 - 3172665
Alignment:
| Q |
18 |
atgattgttgttatgtggatagtgagnnnnnnntaattgtaggtagtccaatgcatgtaatgttgaaaagtgatgatattggtttgttaaagtctggtgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3172938 |
atgattgttgttatgtggatagtgagaaaaaaacaattgtaggtagtccaatgcgtgtaatgttgaaaagtgatgatattggtttgttaaagtc-ggtgg |
3172840 |
T |
|
| Q |
118 |
atgcaatcaggatgcgaactttgattttgttttccaata-ttgggagacttggaatgagaaggaattgtcttttatttcaaaattcaaatacttacgcgt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3172839 |
atgcaatcaggatgcgaactttgattttgttttccaataattgggagacttggaatgaaaaggaattgtcttttatttcaaaattcaaatacttacgcgt |
3172740 |
T |
|
| Q |
217 |
cttgaagttgtcttgttctttaagtaagtcgttctgtgattcaattggaaaattgaggcatttaagatatcttaa |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3172739 |
cttgaagttgtcttgttctttaagtaagtcgttctgtgattcaattggaaaattgaggcatttaagatatcttaa |
3172665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 302
Target Start/End: Complemental strand, 3169322 - 3169082
Alignment:
| Q |
62 |
agtccaatgcatgtaatgttgaaaagtgatgatattggtttgttaaagtctggtggatgcaatcaggatgcgaactttgattttgttttccaatattggg |
161 |
Q |
| |
|
||||| |||||| ||||| |||||| |||||||||||||||||| |||| ||||||||||| |||| |||| |||||||||||| | |||| || | |
|
|
| T |
3169322 |
agtcccatgcatataatgatgaaaatggatgatattggtttgttagagtc-ggtggatgcaagcaggctgcgtactttgattttgatgcccaaccttaag |
3169224 |
T |
|
| Q |
162 |
agactt-ggaatgagaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaagttgtc---ttgttctttaagtaagtcgttctgtgatt |
257 |
Q |
| |
|
| || |||||||| | || ||||| ||||||||||||||||||| ||||||||||||||| | || |||||||||| |||| ||| ||||||| |
|
|
| T |
3169223 |
acgtttaggaatgaggaagacatgtctattatttcaaaattcaaatatttacgcgtcttgaagctatcacattgttctttatgtaa---gttgtgtgatt |
3169127 |
T |
|
| Q |
258 |
caattggaaaattgaggcatttaagatatcttaacctatgctact |
302 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| || |||| |||| |
|
|
| T |
3169126 |
caattgtaaaattgaagcatttaagatatcttgacttatggtact |
3169082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 3141107 - 3141075
Alignment:
| Q |
191 |
atttcaaaattcaaatacttacgcgtcttgaag |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3141107 |
atttcaaaattcaaatacttacgcgtcttgaag |
3141075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 3281432 - 3281329
Alignment:
| Q |
189 |
ttatttcaaaattcaaatacttacgcgtcttgaagttgtc---ttgttctttaagtaagtcgttctgtgattcaattggaaaattgaggcatttaagata |
285 |
Q |
| |
|
|||||||||||||||||| ||||| || |||| | |||| |||||||||||| |||| || | |||||||||||||||||| ||||||||||| |
|
|
| T |
3281432 |
ttatttcaaaattcaaatgtttacgtgttttgatgctgtcatattgttctttaagcaagttgtc---taattcaattggaaaattgaaacatttaagata |
3281336 |
T |
|
| Q |
286 |
tcttaac |
292 |
Q |
| |
|
||||||| |
|
|
| T |
3281335 |
tcttaac |
3281329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 297
Target Start/End: Original strand, 7160494 - 7160737
Alignment:
| Q |
54 |
ttgtaggtagtccaatgcatgtaatgttgaaaagtgatgatattggtttgttaaagtctggtggatgcaatcaggatgcgaactttgattttgttttcca |
153 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||||| ||||||||||||| | || ||||||||| || | |||||||||| |||||| || ||| |
|
|
| T |
7160494 |
ttgtaggaagtcccgtgcatgtaatggtgaaaagtgatgctattggtttgttagaatcat-tggatgcaagcaagttgcgaactttaattttgcttacca |
7160592 |
T |
|
| Q |
154 |
atattgg-gagacttggaatgagaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaagttgtc---ttgttctttaagtaagtcgtt |
249 |
Q |
| |
|
| ||| |||| |||||| ||||||||| | ||| |||||| |||||||||||||||||||||||| || | || ||||||||||||||| | | |
|
|
| T |
7160593 |
acatttcagagaattggaacgagaaggaagtatctgttattttaaaattcaaatacttacgcgtcttatagatatcatgttgttctttaagtaa---ggt |
7160689 |
T |
|
| Q |
250 |
ctgtgattcaattggaaaattgaggcatttaagatatcttaacctatg |
297 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||||||||| |||| |
|
|
| T |
7160690 |
gtgtgaatcaatcggaaaattgaagcatttaagatatcttaacttatg |
7160737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 3918221 - 3918067
Alignment:
| Q |
69 |
tgcatgtaatgttgaaaagtgatgatattggtttgttaaagtctggtggatgcaatcaggatgcgaactttgattttgttttccaata-ttgggagactt |
167 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||||||| |||| || |||||| | ||||||||||||||||||||| ||||| | || |||| | |
|
|
| T |
3918221 |
tgcatgtaatgttgcaaagtgaagctattggtttgttggagtcat-tgaatgcaagaaagatgcgaactttgattttgttgtccaacaattcagagagta |
3918123 |
T |
|
| Q |
168 |
ggaatgagaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaag |
223 |
Q |
| |
|
||||||||||||||||| | |||| |||||||||||||||||||| || |||||| |
|
|
| T |
3918122 |
tgaatgagaaggaattgtttgttatatcaaaattcaaatacttacgtgtattgaag |
3918067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University