View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15894_high_17 (Length: 287)
Name: NF15894_high_17
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15894_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 38580333 - 38580594
Alignment:
| Q |
11 |
cagagagaaggcaagtgtgtacgagaatcaaaattttcatgcaatatatgcaaaatgggtgctgtctgaagtgacaagacatgttcatacattccttcaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38580333 |
cagagagaaggcaagtgtgtacgagaatcaaaattttcatgcaatatatgcaaaaagggtgctgtctgaagtgacaagacatgttcatccattccttcaa |
38580432 |
T |
|
| Q |
111 |
cnnnnnnnnn----catgttcatgcatgttgacctcactcccaaacttttacgtaccacacacacctcatcactcttgtgtaatgtttgtgaatgaatca |
206 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38580433 |
aaaaaaaaaaaagacatgttcatgcatg---acctcactcccaaacttttacgtaccacacacacctcatcactcttgtgtaatgtttgcgaatgaatca |
38580529 |
T |
|
| Q |
207 |
ccaactatatatatctactaaatcatataaatgttacaagcacttgtataaataaataaacattt |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38580530 |
ccaactatatatatctactaaatcatataaatgttacaagcacttgtataaataaataaacattt |
38580594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 38561142 - 38561205
Alignment:
| Q |
12 |
agagagaaggcaagtgtgtacgagaa-tcaaaattttcatgcaatatatgcaaaatgggtgctgt |
75 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
38561142 |
agagagaaggcaagtgtgtacgtgaattcaagattttcatg-tatatatgcaaaatgggtgctgt |
38561205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 38605759 - 38605806
Alignment:
| Q |
156 |
tacgtaccacacacacctcatcactcttgtgtaatgtttgtgaatgaa |
203 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||| |||||||||||| |
|
|
| T |
38605759 |
tacgtatcacacacacctcatcactcttatggaatatttgtgaatgaa |
38605806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 38561276 - 38561316
Alignment:
| Q |
163 |
cacacacacctcatcactcttgtgtaatgtttgtgaatgaa |
203 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
38561276 |
cacacacacctcatcattcttatgtaatatttgtgaatgaa |
38561316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University